Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18391 | 3' | -59.8 | NC_004681.1 | + | 16948 | 0.69 | 0.368484 |
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Target: 5'- -aGCGCU-CGaCGCUgagcguacuuccACCAGGCUGAGc -3' miRNA: 3'- gcCGCGAuGCgGCGA------------UGGUCCGACUC- -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 17676 | 0.7 | 0.313682 |
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Target: 5'- aCGGCGCUugGCCGCggcgucacUGCCccaGUUGAa -3' miRNA: 3'- -GCCGCGAugCGGCG--------AUGGuc-CGACUc -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 54728 | 0.71 | 0.299202 |
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Target: 5'- uGGCGCUACGucuCCGaCgaugACCAGGCccccGAGg -3' miRNA: 3'- gCCGCGAUGC---GGC-Ga---UGGUCCGa---CUC- -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 14429 | 0.72 | 0.25888 |
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Target: 5'- aGGCGaaaauCUACGCCGCccGCgAGGCgGAGg -3' miRNA: 3'- gCCGC-----GAUGCGGCGa-UGgUCCGaCUC- -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 42245 | 0.73 | 0.21757 |
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Target: 5'- gCGGCGUUG-GCCuCUAUCAGGCUGGc -3' miRNA: 3'- -GCCGCGAUgCGGcGAUGGUCCGACUc -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 59777 | 0.74 | 0.177393 |
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Target: 5'- gGGCGUgGCGgCGCUGCCAuguuGGCUGGa -3' miRNA: 3'- gCCGCGaUGCgGCGAUGGU----CCGACUc -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 5918 | 0.8 | 0.071343 |
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Target: 5'- aGGCGCUucucgUGCCGCagUACCAGGUUGGGg -3' miRNA: 3'- gCCGCGAu----GCGGCG--AUGGUCCGACUC- -5' |
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| 18391 | 3' | -59.8 | NC_004681.1 | + | 14221 | 1.08 | 0.000631 |
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Target: 5'- aCGGCGCUACGCCGCUACCAGGCUGAGc -3' miRNA: 3'- -GCCGCGAUGCGGCGAUGGUCCGACUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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