Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18391 | 3' | -59.8 | NC_004681.1 | + | 14221 | 1.08 | 0.000631 |
Target: 5'- aCGGCGCUACGCCGCUACCAGGCUGAGc -3' miRNA: 3'- -GCCGCGAUGCGGCGAUGGUCCGACUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 40152 | 0.66 | 0.556606 |
Target: 5'- aGGcCGCgACGCCGCagAUCgAGGCgaUGAGa -3' miRNA: 3'- gCC-GCGaUGCGGCGa-UGG-UCCG--ACUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 29754 | 0.66 | 0.546346 |
Target: 5'- uCGaGCGCUuccGCGaCCuGCUGCCAGGUg--- -3' miRNA: 3'- -GC-CGCGA---UGC-GG-CGAUGGUCCGacuc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 31184 | 0.66 | 0.529045 |
Target: 5'- gCGGCaaucaauccGCUggcaucaACGCCGCUuucgaggacaucgcaGCguGGCUGGGg -3' miRNA: 3'- -GCCG---------CGA-------UGCGGCGA---------------UGguCCGACUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 22281 | 0.68 | 0.457413 |
Target: 5'- gCGGCGUggGCGCC-CUGCCcgucauggcgcAGGgUGAGc -3' miRNA: 3'- -GCCGCGa-UGCGGcGAUGG-----------UCCgACUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 12056 | 0.68 | 0.448 |
Target: 5'- uCGGCGUUGacgGCCGCauggACgAGGCcGAGu -3' miRNA: 3'- -GCCGCGAUg--CGGCGa---UGgUCCGaCUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 61219 | 0.68 | 0.429503 |
Target: 5'- uGGCGCgACGCCGCcgagaACguGGCgGAa -3' miRNA: 3'- gCCGCGaUGCGGCGa----UGguCCGaCUc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 58656 | 0.69 | 0.37683 |
Target: 5'- aCGGcCGcCUGCGCCGCggGCCAcaccugccugauGGCgGGGg -3' miRNA: 3'- -GCC-GC-GAUGCGGCGa-UGGU------------CCGaCUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 16948 | 0.69 | 0.368484 |
Target: 5'- -aGCGCU-CGaCGCUgagcguacuuccACCAGGCUGAGc -3' miRNA: 3'- gcCGCGAuGCgGCGA------------UGGUCCGACUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 54728 | 0.71 | 0.299202 |
Target: 5'- uGGCGCUACGucuCCGaCgaugACCAGGCccccGAGg -3' miRNA: 3'- gCCGCGAUGC---GGC-Ga---UGGUCCGa---CUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 14429 | 0.72 | 0.25888 |
Target: 5'- aGGCGaaaauCUACGCCGCccGCgAGGCgGAGg -3' miRNA: 3'- gCCGC-----GAUGCGGCGa-UGgUCCGaCUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 19337 | 0.67 | 0.46693 |
Target: 5'- uGGCGCU-UGCUGCggACguGGgaGAGg -3' miRNA: 3'- gCCGCGAuGCGGCGa-UGguCCgaCUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 30872 | 0.68 | 0.448 |
Target: 5'- uGGCGCg--GCCGUUggugACCAGGCccuugGAGc -3' miRNA: 3'- gCCGCGaugCGGCGA----UGGUCCGa----CUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 39324 | 0.68 | 0.438696 |
Target: 5'- gCGGCGC-ACGgugaGCUgacagucgACCAGGCUGAc -3' miRNA: 3'- -GCCGCGaUGCgg--CGA--------UGGUCCGACUc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 1059 | 0.69 | 0.3939 |
Target: 5'- cCGGgGCUcguaGCGCCGgUAggUCAGGgUGAGg -3' miRNA: 3'- -GCCgCGA----UGCGGCgAU--GGUCCgACUC- -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 1175 | 0.69 | 0.3939 |
Target: 5'- aGGCGCU-CG-CGCUGCCAGGgCUc-- -3' miRNA: 3'- gCCGCGAuGCgGCGAUGGUCC-GAcuc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 17676 | 0.7 | 0.313682 |
Target: 5'- aCGGCGCUugGCCGCggcgucacUGCCccaGUUGAa -3' miRNA: 3'- -GCCGCGAugCGGCG--------AUGGuc-CGACUc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 42245 | 0.73 | 0.21757 |
Target: 5'- gCGGCGUUG-GCCuCUAUCAGGCUGGc -3' miRNA: 3'- -GCCGCGAUgCGGcGAUGGUCCGACUc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 59777 | 0.74 | 0.177393 |
Target: 5'- gGGCGUgGCGgCGCUGCCAuguuGGCUGGa -3' miRNA: 3'- gCCGCGaUGCgGCGAUGGU----CCGACUc -5' |
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18391 | 3' | -59.8 | NC_004681.1 | + | 62624 | 0.66 | 0.577286 |
Target: 5'- aCGGUGUcggAgGCgGCUGCCAGGgUGc- -3' miRNA: 3'- -GCCGCGa--UgCGgCGAUGGUCCgACuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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