miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18391 5' -56.2 NC_004681.1 + 3040 0.68 0.604043
Target:  5'- cGCUGGuGAACucggCGCGCGUgGCGGUgCCg -3'
miRNA:   3'- cCGACU-CUUG----GCGCGUAgCGUCA-GGa -5'
18391 5' -56.2 NC_004681.1 + 6890 0.68 0.646893
Target:  5'- gGGUUGAGAgcACCGCGgugaagccgcCAUuggggcCGUAGUCCUu -3'
miRNA:   3'- -CCGACUCU--UGGCGC----------GUA------GCGUCAGGA- -5'
18391 5' -56.2 NC_004681.1 + 14255 1.1 0.001012
Target:  5'- gGGCUGAGAACCGCGCAUCGCAGUCCUa -3'
miRNA:   3'- -CCGACUCUUGGCGCGUAGCGUCAGGA- -5'
18391 5' -56.2 NC_004681.1 + 16725 0.68 0.604043
Target:  5'- gGGCUGAugcccGCCGCcucCAUCGCGG-CCUg -3'
miRNA:   3'- -CCGACUcu---UGGCGc--GUAGCGUCaGGA- -5'
18391 5' -56.2 NC_004681.1 + 18419 0.66 0.771623
Target:  5'- cGCacccGGAUCGgGCAUCGCuGUCCa -3'
miRNA:   3'- cCGacu-CUUGGCgCGUAGCGuCAGGa -5'
18391 5' -56.2 NC_004681.1 + 26953 0.66 0.771623
Target:  5'- uGGCggUGGGGACCgGCcCAcUGCGGUCCc -3'
miRNA:   3'- -CCG--ACUCUUGG-CGcGUaGCGUCAGGa -5'
18391 5' -56.2 NC_004681.1 + 31075 0.66 0.761729
Target:  5'- uGGCggccGAACUG-GCAggaCGCAGUCCg -3'
miRNA:   3'- -CCGacu-CUUGGCgCGUa--GCGUCAGGa -5'
18391 5' -56.2 NC_004681.1 + 31673 0.66 0.720997
Target:  5'- cGGCUGGGGugcuuCUGCGUcugcucucgguaGaCGCGGUCCc -3'
miRNA:   3'- -CCGACUCUu----GGCGCG------------UaGCGUCAGGa -5'
18391 5' -56.2 NC_004681.1 + 32391 0.66 0.761729
Target:  5'- aGGCUGGGggUCGC-CGUUG-AGcUCCa -3'
miRNA:   3'- -CCGACUCuuGGCGcGUAGCgUC-AGGa -5'
18391 5' -56.2 NC_004681.1 + 33363 0.75 0.257212
Target:  5'- uGGCUGAGAccgGCCGCGUcgCGCGcgCCg -3'
miRNA:   3'- -CCGACUCU---UGGCGCGuaGCGUcaGGa -5'
18391 5' -56.2 NC_004681.1 + 37661 0.66 0.741572
Target:  5'- uGCgGGGccucgccagcGGCCGCGCGUCGCuucUCCa -3'
miRNA:   3'- cCGaCUC----------UUGGCGCGUAGCGuc-AGGa -5'
18391 5' -56.2 NC_004681.1 + 39930 0.71 0.469699
Target:  5'- gGGCgc-GGugCGCGCggUGCGGUCCa -3'
miRNA:   3'- -CCGacuCUugGCGCGuaGCGUCAGGa -5'
18391 5' -56.2 NC_004681.1 + 46184 0.66 0.731332
Target:  5'- uGUUGAGGAgCGCgGCuUCGCGG-CCg -3'
miRNA:   3'- cCGACUCUUgGCG-CGuAGCGUCaGGa -5'
18391 5' -56.2 NC_004681.1 + 47130 0.69 0.540602
Target:  5'- cGCcGAGGGCCGCGCcgaacugCGCgAGUUCUg -3'
miRNA:   3'- cCGaCUCUUGGCGCGua-----GCG-UCAGGA- -5'
18391 5' -56.2 NC_004681.1 + 47252 0.66 0.720997
Target:  5'- aGGUUGuucuccucgcAGAACuCGCGCAguucggCGCGGcCCUc -3'
miRNA:   3'- -CCGAC----------UCUUG-GCGCGUa-----GCGUCaGGA- -5'
18391 5' -56.2 NC_004681.1 + 48648 0.66 0.771623
Target:  5'- gGGCUGGGuGCUGC-CGUCGCGcUCg- -3'
miRNA:   3'- -CCGACUCuUGGCGcGUAGCGUcAGga -5'
18391 5' -56.2 NC_004681.1 + 49216 0.66 0.751708
Target:  5'- cGGCUGAaguGACC-CGCGUCGUcuuGGUCa- -3'
miRNA:   3'- -CCGACUc--UUGGcGCGUAGCG---UCAGga -5'
18391 5' -56.2 NC_004681.1 + 50193 0.67 0.689533
Target:  5'- aGGCUGAuGuAGCCGUcC-UUGUAGUCCUg -3'
miRNA:   3'- -CCGACU-C-UUGGCGcGuAGCGUCAGGA- -5'
18391 5' -56.2 NC_004681.1 + 54374 0.66 0.741572
Target:  5'- gGGC-GAGGACCaGCGCcucuUCGgCGGUCg- -3'
miRNA:   3'- -CCGaCUCUUGG-CGCGu---AGC-GUCAGga -5'
18391 5' -56.2 NC_004681.1 + 58478 0.72 0.385263
Target:  5'- aGCUGGGcGCCGCGUgaaccgcGagGCAGUCCa -3'
miRNA:   3'- cCGACUCuUGGCGCG-------UagCGUCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.