Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18391 | 5' | -56.2 | NC_004681.1 | + | 14255 | 1.1 | 0.001012 |
Target: 5'- gGGCUGAGAACCGCGCAUCGCAGUCCUa -3' miRNA: 3'- -CCGACUCUUGGCGCGUAGCGUCAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 18419 | 0.66 | 0.771623 |
Target: 5'- cGCacccGGAUCGgGCAUCGCuGUCCa -3' miRNA: 3'- cCGacu-CUUGGCgCGUAGCGuCAGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 31075 | 0.66 | 0.761729 |
Target: 5'- uGGCggccGAACUG-GCAggaCGCAGUCCg -3' miRNA: 3'- -CCGacu-CUUGGCgCGUa--GCGUCAGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 49216 | 0.66 | 0.751708 |
Target: 5'- cGGCUGAaguGACC-CGCGUCGUcuuGGUCa- -3' miRNA: 3'- -CCGACUc--UUGGcGCGUAGCG---UCAGga -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 37661 | 0.66 | 0.741572 |
Target: 5'- uGCgGGGccucgccagcGGCCGCGCGUCGCuucUCCa -3' miRNA: 3'- cCGaCUC----------UUGGCGCGUAGCGuc-AGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 62218 | 0.66 | 0.720997 |
Target: 5'- gGGCUGGuaccgccaccuGuGCgCGCGCAUCGCcaaGGUCUUc -3' miRNA: 3'- -CCGACU-----------CuUG-GCGCGUAGCG---UCAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 71722 | 0.67 | 0.710579 |
Target: 5'- cGCUGAGuuCCaCGCuccgcgCGUAGUCCUc -3' miRNA: 3'- cCGACUCuuGGcGCGua----GCGUCAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 69809 | 0.68 | 0.636177 |
Target: 5'- aGCUGAG-ACCGUGCccucuGUCGguuGUCCUg -3' miRNA: 3'- cCGACUCuUGGCGCG-----UAGCgu-CAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 47130 | 0.69 | 0.540602 |
Target: 5'- cGCcGAGGGCCGCGCcgaacugCGCgAGUUCUg -3' miRNA: 3'- cCGaCUCUUGGCGCGua-----GCG-UCAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 58478 | 0.72 | 0.385263 |
Target: 5'- aGCUGGGcGCCGCGUgaaccgcGagGCAGUCCa -3' miRNA: 3'- cCGACUCuUGGCGCG-------UagCGUCAGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 33363 | 0.75 | 0.257212 |
Target: 5'- uGGCUGAGAccgGCCGCGUcgCGCGcgCCg -3' miRNA: 3'- -CCGACUCU---UGGCGCGuaGCGUcaGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 46184 | 0.66 | 0.731332 |
Target: 5'- uGUUGAGGAgCGCgGCuUCGCGG-CCg -3' miRNA: 3'- cCGACUCUUgGCG-CGuAGCGUCaGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 31673 | 0.66 | 0.720997 |
Target: 5'- cGGCUGGGGugcuuCUGCGUcugcucucgguaGaCGCGGUCCc -3' miRNA: 3'- -CCGACUCUu----GGCGCG------------UaGCGUCAGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 47252 | 0.66 | 0.720997 |
Target: 5'- aGGUUGuucuccucgcAGAACuCGCGCAguucggCGCGGcCCUc -3' miRNA: 3'- -CCGAC----------UCUUG-GCGCGUa-----GCGUCaGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 50193 | 0.67 | 0.689533 |
Target: 5'- aGGCUGAuGuAGCCGUcC-UUGUAGUCCUg -3' miRNA: 3'- -CCGACU-C-UUGGCGcGuAGCGUCAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 6890 | 0.68 | 0.646893 |
Target: 5'- gGGUUGAGAgcACCGCGgugaagccgcCAUuggggcCGUAGUCCUu -3' miRNA: 3'- -CCGACUCU--UGGCGC----------GUA------GCGUCAGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 3040 | 0.68 | 0.604043 |
Target: 5'- cGCUGGuGAACucggCGCGCGUgGCGGUgCCg -3' miRNA: 3'- cCGACU-CUUG----GCGCGUAgCGUCA-GGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 16725 | 0.68 | 0.604043 |
Target: 5'- gGGCUGAugcccGCCGCcucCAUCGCGG-CCUg -3' miRNA: 3'- -CCGACUcu---UGGCGc--GUAGCGUCaGGA- -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 72358 | 0.69 | 0.582721 |
Target: 5'- aGCUGccGAauACCGCGcCAUCGUggAGUCCa -3' miRNA: 3'- cCGACu-CU--UGGCGC-GUAGCG--UCAGGa -5' |
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18391 | 5' | -56.2 | NC_004681.1 | + | 26953 | 0.66 | 0.771623 |
Target: 5'- uGGCggUGGGGACCgGCcCAcUGCGGUCCc -3' miRNA: 3'- -CCG--ACUCUUGG-CGcGUaGCGUCAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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