miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18392 3' -61.1 NC_004681.1 + 8608 0.65 0.517268
Target:  5'- gGGGCGGUCUcaccguccgcgaagGCgcccaUCAGCUCaGCCgCAg -3'
miRNA:   3'- -CCUGCCGGA--------------CGa----AGUCGAGcCGGgGU- -5'
18392 3' -61.1 NC_004681.1 + 17822 0.66 0.500481
Target:  5'- cGGCGGCC-GCgcaaGGCacCGGCCUCAc -3'
miRNA:   3'- cCUGCCGGaCGaag-UCGa-GCCGGGGU- -5'
18392 3' -61.1 NC_004681.1 + 45220 0.66 0.49072
Target:  5'- aGGuguaGaCCUGCgcgaCGGCgUCGGCCCCGg -3'
miRNA:   3'- -CCug--CcGGACGaa--GUCG-AGCCGGGGU- -5'
18392 3' -61.1 NC_004681.1 + 63145 0.66 0.481048
Target:  5'- gGGugGGUCUGCgaCGaCUCG-CCCCu -3'
miRNA:   3'- -CCugCCGGACGaaGUcGAGCcGGGGu -5'
18392 3' -61.1 NC_004681.1 + 30588 0.66 0.481048
Target:  5'- aGGACGGUCUGCcagacUUCugAGCagUCGGUgCCCu -3'
miRNA:   3'- -CCUGCCGGACG-----AAG--UCG--AGCCG-GGGu -5'
18392 3' -61.1 NC_004681.1 + 61749 0.66 0.480085
Target:  5'- cGGCGGCuuCUGCgcgCAGCUUGGCgauggucgccucuUCCAg -3'
miRNA:   3'- cCUGCCG--GACGaa-GUCGAGCCG-------------GGGU- -5'
18392 3' -61.1 NC_004681.1 + 7480 0.66 0.471469
Target:  5'- uGGGCGGgg-GCUUCuuCUCGGCCgCGg -3'
miRNA:   3'- -CCUGCCggaCGAAGucGAGCCGGgGU- -5'
18392 3' -61.1 NC_004681.1 + 49765 0.67 0.443334
Target:  5'- -cGCGcaguaGCCUGCUUCAcGCUCguuGGCCCg- -3'
miRNA:   3'- ccUGC-----CGGACGAAGU-CGAG---CCGGGgu -5'
18392 3' -61.1 NC_004681.1 + 46325 0.67 0.434167
Target:  5'- uGGGCcaGGCaCUGUggaAGCugggcaucaUCGGCCCCAg -3'
miRNA:   3'- -CCUG--CCG-GACGaagUCG---------AGCCGGGGU- -5'
18392 3' -61.1 NC_004681.1 + 34174 0.67 0.416169
Target:  5'- aGGGCGGCCaGCUUCucaaucuGaCUCGGggcgaaCCCGu -3'
miRNA:   3'- -CCUGCCGGaCGAAGu------C-GAGCCg-----GGGU- -5'
18392 3' -61.1 NC_004681.1 + 31178 0.67 0.407342
Target:  5'- cGGACuGcGuCCUGC--CAGUUCGGCCgCCAc -3'
miRNA:   3'- -CCUG-C-C-GGACGaaGUCGAGCCGG-GGU- -5'
18392 3' -61.1 NC_004681.1 + 67817 0.68 0.38158
Target:  5'- aGGuuGGCCaUGCggUAGCgccagCGGCCCUu -3'
miRNA:   3'- -CCugCCGG-ACGaaGUCGa----GCCGGGGu -5'
18392 3' -61.1 NC_004681.1 + 30137 0.68 0.357732
Target:  5'- aGGCGGCCUGUgggucgggcucaggCGGCgCGGCCgCGg -3'
miRNA:   3'- cCUGCCGGACGaa------------GUCGaGCCGGgGU- -5'
18392 3' -61.1 NC_004681.1 + 57439 0.68 0.356928
Target:  5'- cGGAUGGCCaaguugucugGCgUUAGCgcgCGGUCCCu -3'
miRNA:   3'- -CCUGCCGGa---------CGaAGUCGa--GCCGGGGu -5'
18392 3' -61.1 NC_004681.1 + 3727 0.7 0.303865
Target:  5'- aGGGCGGCCUGCUUCuugucGCgggCGacGCCgUAg -3'
miRNA:   3'- -CCUGCCGGACGAAGu----CGa--GC--CGGgGU- -5'
18392 3' -61.1 NC_004681.1 + 40148 0.72 0.22739
Target:  5'- uGGcguCGGCCUGCgggaUCGGCUUcGCCCUg -3'
miRNA:   3'- -CCu--GCCGGACGa---AGUCGAGcCGGGGu -5'
18392 3' -61.1 NC_004681.1 + 8937 0.72 0.22739
Target:  5'- -aACGGCCUGCUgCAGCguucgacCGGCUUCAc -3'
miRNA:   3'- ccUGCCGGACGAaGUCGa------GCCGGGGU- -5'
18392 3' -61.1 NC_004681.1 + 16424 0.72 0.19565
Target:  5'- aGAUGGCCUGC-UCGGCUuccgucgaucCGGCCgCGg -3'
miRNA:   3'- cCUGCCGGACGaAGUCGA----------GCCGGgGU- -5'
18392 3' -61.1 NC_004681.1 + 46450 0.73 0.185963
Target:  5'- -cGCGGCCUGCUcCGGUaccUCGGCCUgGa -3'
miRNA:   3'- ccUGCCGGACGAaGUCG---AGCCGGGgU- -5'
18392 3' -61.1 NC_004681.1 + 62100 0.75 0.135241
Target:  5'- uGGGCGGCaucCUGCUgcagUCGGUggacgagcgcaucaUCGGCCCCGa -3'
miRNA:   3'- -CCUGCCG---GACGA----AGUCG--------------AGCCGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.