Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18392 | 3' | -61.1 | NC_004681.1 | + | 14681 | 1.09 | 0.000365 |
Target: 5'- aGGACGGCCUGCUUCAGCUCGGCCCCAc -3' miRNA: 3'- -CCUGCCGGACGAAGUCGAGCCGGGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 17822 | 0.66 | 0.500481 |
Target: 5'- cGGCGGCC-GCgcaaGGCacCGGCCUCAc -3' miRNA: 3'- cCUGCCGGaCGaag-UCGa-GCCGGGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 63145 | 0.66 | 0.481048 |
Target: 5'- gGGugGGUCUGCgaCGaCUCG-CCCCu -3' miRNA: 3'- -CCugCCGGACGaaGUcGAGCcGGGGu -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 46325 | 0.67 | 0.434167 |
Target: 5'- uGGGCcaGGCaCUGUggaAGCugggcaucaUCGGCCCCAg -3' miRNA: 3'- -CCUG--CCG-GACGaagUCG---------AGCCGGGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 30137 | 0.68 | 0.357732 |
Target: 5'- aGGCGGCCUGUgggucgggcucaggCGGCgCGGCCgCGg -3' miRNA: 3'- cCUGCCGGACGaa------------GUCGaGCCGGgGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 57439 | 0.68 | 0.356928 |
Target: 5'- cGGAUGGCCaaguugucugGCgUUAGCgcgCGGUCCCu -3' miRNA: 3'- -CCUGCCGGa---------CGaAGUCGa--GCCGGGGu -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 8937 | 0.72 | 0.22739 |
Target: 5'- -aACGGCCUGCUgCAGCguucgacCGGCUUCAc -3' miRNA: 3'- ccUGCCGGACGAaGUCGa------GCCGGGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 46450 | 0.73 | 0.185963 |
Target: 5'- -cGCGGCCUGCUcCGGUaccUCGGCCUgGa -3' miRNA: 3'- ccUGCCGGACGAaGUCG---AGCCGGGgU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 62100 | 0.75 | 0.135241 |
Target: 5'- uGGGCGGCaucCUGCUgcagUCGGUggacgagcgcaucaUCGGCCCCGa -3' miRNA: 3'- -CCUGCCG---GACGA----AGUCG--------------AGCCGGGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 45220 | 0.66 | 0.49072 |
Target: 5'- aGGuguaGaCCUGCgcgaCGGCgUCGGCCCCGg -3' miRNA: 3'- -CCug--CcGGACGaa--GUCG-AGCCGGGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 30588 | 0.66 | 0.481048 |
Target: 5'- aGGACGGUCUGCcagacUUCugAGCagUCGGUgCCCu -3' miRNA: 3'- -CCUGCCGGACG-----AAG--UCG--AGCCG-GGGu -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 61749 | 0.66 | 0.480085 |
Target: 5'- cGGCGGCuuCUGCgcgCAGCUUGGCgauggucgccucuUCCAg -3' miRNA: 3'- cCUGCCG--GACGaa-GUCGAGCCG-------------GGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 7480 | 0.66 | 0.471469 |
Target: 5'- uGGGCGGgg-GCUUCuuCUCGGCCgCGg -3' miRNA: 3'- -CCUGCCggaCGAAGucGAGCCGGgGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 49765 | 0.67 | 0.443334 |
Target: 5'- -cGCGcaguaGCCUGCUUCAcGCUCguuGGCCCg- -3' miRNA: 3'- ccUGC-----CGGACGAAGU-CGAG---CCGGGgu -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 34174 | 0.67 | 0.416169 |
Target: 5'- aGGGCGGCCaGCUUCucaaucuGaCUCGGggcgaaCCCGu -3' miRNA: 3'- -CCUGCCGGaCGAAGu------C-GAGCCg-----GGGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 31178 | 0.67 | 0.407342 |
Target: 5'- cGGACuGcGuCCUGC--CAGUUCGGCCgCCAc -3' miRNA: 3'- -CCUG-C-C-GGACGaaGUCGAGCCGG-GGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 67817 | 0.68 | 0.38158 |
Target: 5'- aGGuuGGCCaUGCggUAGCgccagCGGCCCUu -3' miRNA: 3'- -CCugCCGG-ACGaaGUCGa----GCCGGGGu -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 3727 | 0.7 | 0.303865 |
Target: 5'- aGGGCGGCCUGCUUCuugucGCgggCGacGCCgUAg -3' miRNA: 3'- -CCUGCCGGACGAAGu----CGa--GC--CGGgGU- -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 40148 | 0.72 | 0.22739 |
Target: 5'- uGGcguCGGCCUGCgggaUCGGCUUcGCCCUg -3' miRNA: 3'- -CCu--GCCGGACGa---AGUCGAGcCGGGGu -5' |
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18392 | 3' | -61.1 | NC_004681.1 | + | 16424 | 0.72 | 0.19565 |
Target: 5'- aGAUGGCCUGC-UCGGCUuccgucgaucCGGCCgCGg -3' miRNA: 3'- cCUGCCGGACGaAGUCGA----------GCCGGgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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