miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18392 5' -55.3 NC_004681.1 + 57333 0.66 0.787305
Target:  5'- -cUACCGCCGCaagcucGcGUaccGCGGGGAGCc -3'
miRNA:   3'- auGUGGCGGCGa-----CuCAa--CGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 42238 0.66 0.786326
Target:  5'- cACACgGCCGCcGAGcUGCuGGucccgcccgcggaAGGCg -3'
miRNA:   3'- aUGUGgCGGCGaCUCaACGuCC-------------UUCG- -5'
18392 5' -55.3 NC_004681.1 + 37761 0.66 0.777453
Target:  5'- cGCGCgGCCGCUggcGAGgccccGCAGaagucGGAGCg -3'
miRNA:   3'- aUGUGgCGGCGA---CUCaa---CGUC-----CUUCG- -5'
18392 5' -55.3 NC_004681.1 + 57808 0.66 0.777453
Target:  5'- cGCGCCGCCGaggUGgcgaAGgaGCGGGGcuGGCc -3'
miRNA:   3'- aUGUGGCGGCg--AC----UCaaCGUCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 59830 0.66 0.77347
Target:  5'- gACAUCGCUGCcgacccagguuccGAGUguugGCAGGccGCa -3'
miRNA:   3'- aUGUGGCGGCGa------------CUCAa---CGUCCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 34628 0.66 0.767453
Target:  5'- -cCACCGCgGCgcccGAGUUuuCAGGAuaGGCa -3'
miRNA:   3'- auGUGGCGgCGa---CUCAAc-GUCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 31545 0.66 0.767453
Target:  5'- cAgGCCGuCCGCaGAGUucaugucgcacuUGCcgaAGGGAGCu -3'
miRNA:   3'- aUgUGGC-GGCGaCUCA------------ACG---UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 4085 0.66 0.747054
Target:  5'- aACcCCG-CGCUGGGUcGCuuccucucguGGGAGGCa -3'
miRNA:   3'- aUGuGGCgGCGACUCAaCG----------UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 50860 0.66 0.747054
Target:  5'- aGCGCCucGCCGCcGAGUaccccgacaaGCAGGcGGCc -3'
miRNA:   3'- aUGUGG--CGGCGaCUCAa---------CGUCCuUCG- -5'
18392 5' -55.3 NC_004681.1 + 69984 0.66 0.747054
Target:  5'- gAgACCuCCGa-GAGUUGCGGGuAGCu -3'
miRNA:   3'- aUgUGGcGGCgaCUCAACGUCCuUCG- -5'
18392 5' -55.3 NC_004681.1 + 38950 0.66 0.747054
Target:  5'- gUGCAuCUGCgGCUGAcc-GCGGuGAAGCa -3'
miRNA:   3'- -AUGU-GGCGgCGACUcaaCGUC-CUUCG- -5'
18392 5' -55.3 NC_004681.1 + 34742 0.66 0.747054
Target:  5'- --gGCCGCCGCcccuuGUcgaaGUAGGggGCa -3'
miRNA:   3'- augUGGCGGCGacu--CAa---CGUCCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 9413 0.66 0.736676
Target:  5'- --uGCCGCCGUUGAccggGUUGCcGuAGGCg -3'
miRNA:   3'- augUGGCGGCGACU----CAACGuCcUUCG- -5'
18392 5' -55.3 NC_004681.1 + 8715 0.66 0.736676
Target:  5'- aACGCCGCCGC--GGUcGCu-GAAGCc -3'
miRNA:   3'- aUGUGGCGGCGacUCAaCGucCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 59117 0.67 0.726195
Target:  5'- -cUACCGCCG-UGAcg-GCAGGAacGGCu -3'
miRNA:   3'- auGUGGCGGCgACUcaaCGUCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 30338 0.67 0.726195
Target:  5'- -cCGCCGCCGCUGug--GCGGGc--- -3'
miRNA:   3'- auGUGGCGGCGACucaaCGUCCuucg -5'
18392 5' -55.3 NC_004681.1 + 27455 0.67 0.715621
Target:  5'- ---uCCGCCGUUGAGggucaGCucgaauGGggGCg -3'
miRNA:   3'- auguGGCGGCGACUCaa---CGu-----CCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 41923 0.67 0.715621
Target:  5'- gGC-CCGCUGCaGGGaaaUGCcccGGGAGGCg -3'
miRNA:   3'- aUGuGGCGGCGaCUCa--ACG---UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 16719 0.67 0.714559
Target:  5'- aUGC-CCGCCGCcuccaucgcggccUGcAGUUGCAGGucGa -3'
miRNA:   3'- -AUGuGGCGGCG-------------AC-UCAACGUCCuuCg -5'
18392 5' -55.3 NC_004681.1 + 39993 0.67 0.704967
Target:  5'- --gGCCGCgCGCUGGGggucuccGCccgccuggucgAGGAAGCg -3'
miRNA:   3'- augUGGCG-GCGACUCaa-----CG-----------UCCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.