Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18392 | 5' | -55.3 | NC_004681.1 | + | 57333 | 0.66 | 0.787305 |
Target: 5'- -cUACCGCCGCaagcucGcGUaccGCGGGGAGCc -3' miRNA: 3'- auGUGGCGGCGa-----CuCAa--CGUCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 8715 | 0.66 | 0.736676 |
Target: 5'- aACGCCGCCGC--GGUcGCu-GAAGCc -3' miRNA: 3'- aUGUGGCGGCGacUCAaCGucCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 34742 | 0.66 | 0.747054 |
Target: 5'- --gGCCGCCGCcccuuGUcgaaGUAGGggGCa -3' miRNA: 3'- augUGGCGGCGacu--CAa---CGUCCuuCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 38950 | 0.66 | 0.747054 |
Target: 5'- gUGCAuCUGCgGCUGAcc-GCGGuGAAGCa -3' miRNA: 3'- -AUGU-GGCGgCGACUcaaCGUC-CUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 69984 | 0.66 | 0.747054 |
Target: 5'- gAgACCuCCGa-GAGUUGCGGGuAGCu -3' miRNA: 3'- aUgUGGcGGCgaCUCAACGUCCuUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 37761 | 0.66 | 0.777453 |
Target: 5'- cGCGCgGCCGCUggcGAGgccccGCAGaagucGGAGCg -3' miRNA: 3'- aUGUGgCGGCGA---CUCaa---CGUC-----CUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 31545 | 0.66 | 0.767453 |
Target: 5'- cAgGCCGuCCGCaGAGUucaugucgcacuUGCcgaAGGGAGCu -3' miRNA: 3'- aUgUGGC-GGCGaCUCA------------ACG---UCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 9413 | 0.66 | 0.736676 |
Target: 5'- --uGCCGCCGUUGAccggGUUGCcGuAGGCg -3' miRNA: 3'- augUGGCGGCGACU----CAACGuCcUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 34628 | 0.66 | 0.767453 |
Target: 5'- -cCACCGCgGCgcccGAGUUuuCAGGAuaGGCa -3' miRNA: 3'- auGUGGCGgCGa---CUCAAc-GUCCU--UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 50860 | 0.66 | 0.747054 |
Target: 5'- aGCGCCucGCCGCcGAGUaccccgacaaGCAGGcGGCc -3' miRNA: 3'- aUGUGG--CGGCGaCUCAa---------CGUCCuUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 57808 | 0.66 | 0.777453 |
Target: 5'- cGCGCCGCCGaggUGgcgaAGgaGCGGGGcuGGCc -3' miRNA: 3'- aUGUGGCGGCg--AC----UCaaCGUCCU--UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 59830 | 0.66 | 0.77347 |
Target: 5'- gACAUCGCUGCcgacccagguuccGAGUguugGCAGGccGCa -3' miRNA: 3'- aUGUGGCGGCGa------------CUCAa---CGUCCuuCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 42238 | 0.66 | 0.786326 |
Target: 5'- cACACgGCCGCcGAGcUGCuGGucccgcccgcggaAGGCg -3' miRNA: 3'- aUGUGgCGGCGaCUCaACGuCC-------------UUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 4085 | 0.66 | 0.747054 |
Target: 5'- aACcCCG-CGCUGGGUcGCuuccucucguGGGAGGCa -3' miRNA: 3'- aUGuGGCgGCGACUCAaCG----------UCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 59117 | 0.67 | 0.726195 |
Target: 5'- -cUACCGCCG-UGAcg-GCAGGAacGGCu -3' miRNA: 3'- auGUGGCGGCgACUcaaCGUCCU--UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 47107 | 0.67 | 0.704967 |
Target: 5'- -cCGCCGCCGCUGAGcgacgagaacGCcgaGGGccGCg -3' miRNA: 3'- auGUGGCGGCGACUCaa--------CG---UCCuuCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 60433 | 0.67 | 0.694242 |
Target: 5'- gACGCCuGCCGCaucGAGUaugaGCAGGGcggaucgcuAGCg -3' miRNA: 3'- aUGUGG-CGGCGa--CUCAa---CGUCCU---------UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 5870 | 0.67 | 0.683458 |
Target: 5'- cACAUCGCCGCggUGGcGUUGCGcGAGGa -3' miRNA: 3'- aUGUGGCGGCG--ACU-CAACGUcCUUCg -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 16719 | 0.67 | 0.714559 |
Target: 5'- aUGC-CCGCCGCcuccaucgcggccUGcAGUUGCAGGucGa -3' miRNA: 3'- -AUGuGGCGGCG-------------AC-UCAACGUCCuuCg -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 49427 | 0.67 | 0.704967 |
Target: 5'- gGCGCCGCCGUggcggacggUGAGguugUGCAGaccGCc -3' miRNA: 3'- aUGUGGCGGCG---------ACUCa---ACGUCcuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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