Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18392 | 5' | -55.3 | NC_004681.1 | + | 14715 | 0.9 | 0.025405 |
Target: 5'- uUACACCGCCuCgGAGUUGCAGGAAGCc -3' miRNA: 3'- -AUGUGGCGGcGaCUCAACGUCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 3113 | 0.73 | 0.342444 |
Target: 5'- gGCAUUGCCGCUGgcguAGUcGUAGGAgAGCg -3' miRNA: 3'- aUGUGGCGGCGAC----UCAaCGUCCU-UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 8178 | 0.71 | 0.470201 |
Target: 5'- aAgACCGCCGCgGAGaagaAGGAAGCc -3' miRNA: 3'- aUgUGGCGGCGaCUCaacgUCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 41872 | 0.7 | 0.510983 |
Target: 5'- aAgGCCGUCGaaccugGAGgcgUGCAGGAGGUu -3' miRNA: 3'- aUgUGGCGGCga----CUCa--ACGUCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 62283 | 0.7 | 0.53192 |
Target: 5'- -uCACCGCCGagGAGUUcgacGCGGGAuggaAGCg -3' miRNA: 3'- auGUGGCGGCgaCUCAA----CGUCCU----UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 20655 | 0.7 | 0.536146 |
Target: 5'- aGCGCCGCCauuugugcggcgguuGCUGcGUUGUAcgggucugcgcGGAGGCg -3' miRNA: 3'- aUGUGGCGG---------------CGACuCAACGU-----------CCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 35660 | 0.7 | 0.541444 |
Target: 5'- aAUcCCGCCGCuuuUGGGUUGUcuccaacAGGAGGUa -3' miRNA: 3'- aUGuGGCGGCG---ACUCAACG-------UCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 12679 | 0.69 | 0.55316 |
Target: 5'- -uCACCGCCGCgGAGcucaaccGUAuGGAGGCu -3' miRNA: 3'- auGUGGCGGCGaCUCaa-----CGU-CCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 26902 | 0.69 | 0.596317 |
Target: 5'- cGCAUUGCCGUUGAGUaucacaGCGGcGAcucGGCa -3' miRNA: 3'- aUGUGGCGGCGACUCAa-----CGUC-CU---UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 2802 | 0.68 | 0.618107 |
Target: 5'- gGCGCCGuCCGC-GAaUUGCAcGGAgaAGCa -3' miRNA: 3'- aUGUGGC-GGCGaCUcAACGU-CCU--UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 45920 | 0.68 | 0.629025 |
Target: 5'- gACGCCaucaGgCGUucgGAGUccUGCAGGGAGCu -3' miRNA: 3'- aUGUGG----CgGCGa--CUCA--ACGUCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 44783 | 0.68 | 0.639946 |
Target: 5'- gACGCCGCCGUcgccGUUGCcgucgAGGAGGg -3' miRNA: 3'- aUGUGGCGGCGacu-CAACG-----UCCUUCg -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 14439 | 0.68 | 0.661757 |
Target: 5'- cUACGCCGcCCGC-GAG--GC-GGAGGCg -3' miRNA: 3'- -AUGUGGC-GGCGaCUCaaCGuCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 43833 | 0.68 | 0.661757 |
Target: 5'- gGCACCagcguCCGCUGAaaaGguGGAGGCc -3' miRNA: 3'- aUGUGGc----GGCGACUcaaCguCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 59333 | 0.68 | 0.661757 |
Target: 5'- gUGCACCucgaCCGUUGAGgaGCugacguucuGGAAGCu -3' miRNA: 3'- -AUGUGGc---GGCGACUCaaCGu--------CCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 17361 | 0.67 | 0.683458 |
Target: 5'- aUAC-CCGCCGCccgcguaguUGAGguaCGGGAGGUa -3' miRNA: 3'- -AUGuGGCGGCG---------ACUCaacGUCCUUCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 5870 | 0.67 | 0.683458 |
Target: 5'- cACAUCGCCGCggUGGcGUUGCGcGAGGa -3' miRNA: 3'- aUGUGGCGGCG--ACU-CAACGUcCUUCg -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 2124 | 0.67 | 0.694242 |
Target: 5'- -cCACCcCCGCUGAuGUgguaacccgGCAGGuuGCg -3' miRNA: 3'- auGUGGcGGCGACU-CAa--------CGUCCuuCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 60433 | 0.67 | 0.694242 |
Target: 5'- gACGCCuGCCGCaucGAGUaugaGCAGGGcggaucgcuAGCg -3' miRNA: 3'- aUGUGG-CGGCGa--CUCAa---CGUCCU---------UCG- -5' |
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18392 | 5' | -55.3 | NC_004681.1 | + | 34435 | 0.67 | 0.700684 |
Target: 5'- cACGCCGCCGCggcguaagacuucGGG-UGCuGGGAugAGCu -3' miRNA: 3'- aUGUGGCGGCGa------------CUCaACG-UCCU--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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