miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18392 5' -55.3 NC_004681.1 + 39993 0.67 0.704967
Target:  5'- --gGCCGCgCGCUGGGggucuccGCccgccuggucgAGGAAGCg -3'
miRNA:   3'- augUGGCG-GCGACUCaa-----CG-----------UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 49427 0.67 0.704967
Target:  5'- gGCGCCGCCGUggcggacggUGAGguugUGCAGaccGCc -3'
miRNA:   3'- aUGUGGCGGCG---------ACUCa---ACGUCcuuCG- -5'
18392 5' -55.3 NC_004681.1 + 34435 0.67 0.700684
Target:  5'- cACGCCGCCGCggcguaagacuucGGG-UGCuGGGAugAGCu -3'
miRNA:   3'- aUGUGGCGGCGa------------CUCaACG-UCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 60433 0.67 0.694242
Target:  5'- gACGCCuGCCGCaucGAGUaugaGCAGGGcggaucgcuAGCg -3'
miRNA:   3'- aUGUGG-CGGCGa--CUCAa---CGUCCU---------UCG- -5'
18392 5' -55.3 NC_004681.1 + 2124 0.67 0.694242
Target:  5'- -cCACCcCCGCUGAuGUgguaacccgGCAGGuuGCg -3'
miRNA:   3'- auGUGGcGGCGACU-CAa--------CGUCCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 17361 0.67 0.683458
Target:  5'- aUAC-CCGCCGCccgcguaguUGAGguaCGGGAGGUa -3'
miRNA:   3'- -AUGuGGCGGCG---------ACUCaacGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 5870 0.67 0.683458
Target:  5'- cACAUCGCCGCggUGGcGUUGCGcGAGGa -3'
miRNA:   3'- aUGUGGCGGCG--ACU-CAACGUcCUUCg -5'
18392 5' -55.3 NC_004681.1 + 59333 0.68 0.661757
Target:  5'- gUGCACCucgaCCGUUGAGgaGCugacguucuGGAAGCu -3'
miRNA:   3'- -AUGUGGc---GGCGACUCaaCGu--------CCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 43833 0.68 0.661757
Target:  5'- gGCACCagcguCCGCUGAaaaGguGGAGGCc -3'
miRNA:   3'- aUGUGGc----GGCGACUcaaCguCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 14439 0.68 0.661757
Target:  5'- cUACGCCGcCCGC-GAG--GC-GGAGGCg -3'
miRNA:   3'- -AUGUGGC-GGCGaCUCaaCGuCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 44783 0.68 0.639946
Target:  5'- gACGCCGCCGUcgccGUUGCcgucgAGGAGGg -3'
miRNA:   3'- aUGUGGCGGCGacu-CAACG-----UCCUUCg -5'
18392 5' -55.3 NC_004681.1 + 45920 0.68 0.629025
Target:  5'- gACGCCaucaGgCGUucgGAGUccUGCAGGGAGCu -3'
miRNA:   3'- aUGUGG----CgGCGa--CUCA--ACGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 2802 0.68 0.618107
Target:  5'- gGCGCCGuCCGC-GAaUUGCAcGGAgaAGCa -3'
miRNA:   3'- aUGUGGC-GGCGaCUcAACGU-CCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 26902 0.69 0.596317
Target:  5'- cGCAUUGCCGUUGAGUaucacaGCGGcGAcucGGCa -3'
miRNA:   3'- aUGUGGCGGCGACUCAa-----CGUC-CU---UCG- -5'
18392 5' -55.3 NC_004681.1 + 12679 0.69 0.55316
Target:  5'- -uCACCGCCGCgGAGcucaaccGUAuGGAGGCu -3'
miRNA:   3'- auGUGGCGGCGaCUCaa-----CGU-CCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 35660 0.7 0.541444
Target:  5'- aAUcCCGCCGCuuuUGGGUUGUcuccaacAGGAGGUa -3'
miRNA:   3'- aUGuGGCGGCG---ACUCAACG-------UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 20655 0.7 0.536146
Target:  5'- aGCGCCGCCauuugugcggcgguuGCUGcGUUGUAcgggucugcgcGGAGGCg -3'
miRNA:   3'- aUGUGGCGG---------------CGACuCAACGU-----------CCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 62283 0.7 0.53192
Target:  5'- -uCACCGCCGagGAGUUcgacGCGGGAuggaAGCg -3'
miRNA:   3'- auGUGGCGGCgaCUCAA----CGUCCU----UCG- -5'
18392 5' -55.3 NC_004681.1 + 41872 0.7 0.510983
Target:  5'- aAgGCCGUCGaaccugGAGgcgUGCAGGAGGUu -3'
miRNA:   3'- aUgUGGCGGCga----CUCa--ACGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 8178 0.71 0.470201
Target:  5'- aAgACCGCCGCgGAGaagaAGGAAGCc -3'
miRNA:   3'- aUgUGGCGGCGaCUCaacgUCCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.