miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18392 5' -55.3 NC_004681.1 + 2124 0.67 0.694242
Target:  5'- -cCACCcCCGCUGAuGUgguaacccgGCAGGuuGCg -3'
miRNA:   3'- auGUGGcGGCGACU-CAa--------CGUCCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 2802 0.68 0.618107
Target:  5'- gGCGCCGuCCGC-GAaUUGCAcGGAgaAGCa -3'
miRNA:   3'- aUGUGGC-GGCGaCUcAACGU-CCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 3113 0.73 0.342444
Target:  5'- gGCAUUGCCGCUGgcguAGUcGUAGGAgAGCg -3'
miRNA:   3'- aUGUGGCGGCGAC----UCAaCGUCCU-UCG- -5'
18392 5' -55.3 NC_004681.1 + 4085 0.66 0.747054
Target:  5'- aACcCCG-CGCUGGGUcGCuuccucucguGGGAGGCa -3'
miRNA:   3'- aUGuGGCgGCGACUCAaCG----------UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 5870 0.67 0.683458
Target:  5'- cACAUCGCCGCggUGGcGUUGCGcGAGGa -3'
miRNA:   3'- aUGUGGCGGCG--ACU-CAACGUcCUUCg -5'
18392 5' -55.3 NC_004681.1 + 8178 0.71 0.470201
Target:  5'- aAgACCGCCGCgGAGaagaAGGAAGCc -3'
miRNA:   3'- aUgUGGCGGCGaCUCaacgUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 8715 0.66 0.736676
Target:  5'- aACGCCGCCGC--GGUcGCu-GAAGCc -3'
miRNA:   3'- aUGUGGCGGCGacUCAaCGucCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 9413 0.66 0.736676
Target:  5'- --uGCCGCCGUUGAccggGUUGCcGuAGGCg -3'
miRNA:   3'- augUGGCGGCGACU----CAACGuCcUUCG- -5'
18392 5' -55.3 NC_004681.1 + 12679 0.69 0.55316
Target:  5'- -uCACCGCCGCgGAGcucaaccGUAuGGAGGCu -3'
miRNA:   3'- auGUGGCGGCGaCUCaa-----CGU-CCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 14439 0.68 0.661757
Target:  5'- cUACGCCGcCCGC-GAG--GC-GGAGGCg -3'
miRNA:   3'- -AUGUGGC-GGCGaCUCaaCGuCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 14715 0.9 0.025405
Target:  5'- uUACACCGCCuCgGAGUUGCAGGAAGCc -3'
miRNA:   3'- -AUGUGGCGGcGaCUCAACGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 16719 0.67 0.714559
Target:  5'- aUGC-CCGCCGCcuccaucgcggccUGcAGUUGCAGGucGa -3'
miRNA:   3'- -AUGuGGCGGCG-------------AC-UCAACGUCCuuCg -5'
18392 5' -55.3 NC_004681.1 + 17361 0.67 0.683458
Target:  5'- aUAC-CCGCCGCccgcguaguUGAGguaCGGGAGGUa -3'
miRNA:   3'- -AUGuGGCGGCG---------ACUCaacGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 20655 0.7 0.536146
Target:  5'- aGCGCCGCCauuugugcggcgguuGCUGcGUUGUAcgggucugcgcGGAGGCg -3'
miRNA:   3'- aUGUGGCGG---------------CGACuCAACGU-----------CCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 26902 0.69 0.596317
Target:  5'- cGCAUUGCCGUUGAGUaucacaGCGGcGAcucGGCa -3'
miRNA:   3'- aUGUGGCGGCGACUCAa-----CGUC-CU---UCG- -5'
18392 5' -55.3 NC_004681.1 + 27455 0.67 0.715621
Target:  5'- ---uCCGCCGUUGAGggucaGCucgaauGGggGCg -3'
miRNA:   3'- auguGGCGGCGACUCaa---CGu-----CCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 30338 0.67 0.726195
Target:  5'- -cCGCCGCCGCUGug--GCGGGc--- -3'
miRNA:   3'- auGUGGCGGCGACucaaCGUCCuucg -5'
18392 5' -55.3 NC_004681.1 + 31545 0.66 0.767453
Target:  5'- cAgGCCGuCCGCaGAGUucaugucgcacuUGCcgaAGGGAGCu -3'
miRNA:   3'- aUgUGGC-GGCGaCUCA------------ACG---UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 34435 0.67 0.700684
Target:  5'- cACGCCGCCGCggcguaagacuucGGG-UGCuGGGAugAGCu -3'
miRNA:   3'- aUGUGGCGGCGa------------CUCaACG-UCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 34628 0.66 0.767453
Target:  5'- -cCACCGCgGCgcccGAGUUuuCAGGAuaGGCa -3'
miRNA:   3'- auGUGGCGgCGa---CUCAAc-GUCCU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.