miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18392 5' -55.3 NC_004681.1 + 57333 0.66 0.787305
Target:  5'- -cUACCGCCGCaagcucGcGUaccGCGGGGAGCc -3'
miRNA:   3'- auGUGGCGGCGa-----CuCAa--CGUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 8715 0.66 0.736676
Target:  5'- aACGCCGCCGC--GGUcGCu-GAAGCc -3'
miRNA:   3'- aUGUGGCGGCGacUCAaCGucCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 4085 0.66 0.747054
Target:  5'- aACcCCG-CGCUGGGUcGCuuccucucguGGGAGGCa -3'
miRNA:   3'- aUGuGGCgGCGACUCAaCG----------UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 34742 0.66 0.747054
Target:  5'- --gGCCGCCGCcccuuGUcgaaGUAGGggGCa -3'
miRNA:   3'- augUGGCGGCGacu--CAa---CGUCCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 38950 0.66 0.747054
Target:  5'- gUGCAuCUGCgGCUGAcc-GCGGuGAAGCa -3'
miRNA:   3'- -AUGU-GGCGgCGACUcaaCGUC-CUUCG- -5'
18392 5' -55.3 NC_004681.1 + 69984 0.66 0.747054
Target:  5'- gAgACCuCCGa-GAGUUGCGGGuAGCu -3'
miRNA:   3'- aUgUGGcGGCgaCUCAACGUCCuUCG- -5'
18392 5' -55.3 NC_004681.1 + 50860 0.66 0.747054
Target:  5'- aGCGCCucGCCGCcGAGUaccccgacaaGCAGGcGGCc -3'
miRNA:   3'- aUGUGG--CGGCGaCUCAa---------CGUCCuUCG- -5'
18392 5' -55.3 NC_004681.1 + 57808 0.66 0.777453
Target:  5'- cGCGCCGCCGaggUGgcgaAGgaGCGGGGcuGGCc -3'
miRNA:   3'- aUGUGGCGGCg--AC----UCaaCGUCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 42238 0.66 0.786326
Target:  5'- cACACgGCCGCcGAGcUGCuGGucccgcccgcggaAGGCg -3'
miRNA:   3'- aUGUGgCGGCGaCUCaACGuCC-------------UUCG- -5'
18392 5' -55.3 NC_004681.1 + 59117 0.67 0.726195
Target:  5'- -cUACCGCCG-UGAcg-GCAGGAacGGCu -3'
miRNA:   3'- auGUGGCGGCgACUcaaCGUCCU--UCG- -5'
18392 5' -55.3 NC_004681.1 + 47107 0.67 0.704967
Target:  5'- -cCGCCGCCGCUGAGcgacgagaacGCcgaGGGccGCg -3'
miRNA:   3'- auGUGGCGGCGACUCaa--------CG---UCCuuCG- -5'
18392 5' -55.3 NC_004681.1 + 60433 0.67 0.694242
Target:  5'- gACGCCuGCCGCaucGAGUaugaGCAGGGcggaucgcuAGCg -3'
miRNA:   3'- aUGUGG-CGGCGa--CUCAa---CGUCCU---------UCG- -5'
18392 5' -55.3 NC_004681.1 + 8178 0.71 0.470201
Target:  5'- aAgACCGCCGCgGAGaagaAGGAAGCc -3'
miRNA:   3'- aUgUGGCGGCGaCUCaacgUCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 62283 0.7 0.53192
Target:  5'- -uCACCGCCGagGAGUUcgacGCGGGAuggaAGCg -3'
miRNA:   3'- auGUGGCGGCgaCUCAA----CGUCCU----UCG- -5'
18392 5' -55.3 NC_004681.1 + 35660 0.7 0.541444
Target:  5'- aAUcCCGCCGCuuuUGGGUUGUcuccaacAGGAGGUa -3'
miRNA:   3'- aUGuGGCGGCG---ACUCAACG-------UCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 12679 0.69 0.55316
Target:  5'- -uCACCGCCGCgGAGcucaaccGUAuGGAGGCu -3'
miRNA:   3'- auGUGGCGGCGaCUCaa-----CGU-CCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 26902 0.69 0.596317
Target:  5'- cGCAUUGCCGUUGAGUaucacaGCGGcGAcucGGCa -3'
miRNA:   3'- aUGUGGCGGCGACUCAa-----CGUC-CU---UCG- -5'
18392 5' -55.3 NC_004681.1 + 43833 0.68 0.661757
Target:  5'- gGCACCagcguCCGCUGAaaaGguGGAGGCc -3'
miRNA:   3'- aUGUGGc----GGCGACUcaaCguCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 14439 0.68 0.661757
Target:  5'- cUACGCCGcCCGC-GAG--GC-GGAGGCg -3'
miRNA:   3'- -AUGUGGC-GGCGaCUCaaCGuCCUUCG- -5'
18392 5' -55.3 NC_004681.1 + 2124 0.67 0.694242
Target:  5'- -cCACCcCCGCUGAuGUgguaacccgGCAGGuuGCg -3'
miRNA:   3'- auGUGGcGGCGACU-CAa--------CGUCCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.