miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18393 3' -56.4 NC_004681.1 + 58815 0.66 0.75686
Target:  5'- -cUGGGCCUcacccGGAcAGAGGCCAacAACc -3'
miRNA:   3'- gcACCCGGA-----CCU-UCUCCGGUacUUGc -5'
18393 3' -56.4 NC_004681.1 + 54377 0.66 0.735615
Target:  5'- gGUGGGCgaGGAccagcgccucuucGGcGGUCGUGAuGCGg -3'
miRNA:   3'- gCACCCGgaCCU-------------UCuCCGGUACU-UGC- -5'
18393 3' -56.4 NC_004681.1 + 70291 0.66 0.716017
Target:  5'- --cGGGCCagacgUGGAAG-GGCagacagCAUGAGCGu -3'
miRNA:   3'- gcaCCCGG-----ACCUUCuCCG------GUACUUGC- -5'
18393 3' -56.4 NC_004681.1 + 61691 0.67 0.684526
Target:  5'- aGUGGGUgcagucaaugugCUuccuuguucGGAGGGGGCCAUGAu-- -3'
miRNA:   3'- gCACCCG------------GA---------CCUUCUCCGGUACUugc -5'
18393 3' -56.4 NC_004681.1 + 25273 0.67 0.684526
Target:  5'- --gGGGCCUGaccGGGGCCAcUGAAUa -3'
miRNA:   3'- gcaCCCGGACcuuCUCCGGU-ACUUGc -5'
18393 3' -56.4 NC_004681.1 + 18448 0.67 0.663279
Target:  5'- --aGGGCaUGGAGGucgccaaccGGGCCAUGAAg- -3'
miRNA:   3'- gcaCCCGgACCUUC---------UCCGGUACUUgc -5'
18393 3' -56.4 NC_004681.1 + 9076 0.67 0.663279
Target:  5'- gGUGGcGCCgacaGcGAGGAGGCCGaGGagGCGg -3'
miRNA:   3'- gCACC-CGGa---C-CUUCUCCGGUaCU--UGC- -5'
18393 3' -56.4 NC_004681.1 + 38429 0.68 0.620529
Target:  5'- --aGGGCCgcgaGGAAGAGaGCgAgGAACGa -3'
miRNA:   3'- gcaCCCGGa---CCUUCUC-CGgUaCUUGC- -5'
18393 3' -56.4 NC_004681.1 + 42284 0.69 0.577928
Target:  5'- ---cGGCCUGGAAGAaGGCCcagcucggGAGCa -3'
miRNA:   3'- gcacCCGGACCUUCU-CCGGua------CUUGc -5'
18393 3' -56.4 NC_004681.1 + 7569 0.69 0.577928
Target:  5'- gGUGgaggacGGCC-GG-GGAGGCCGUGAugGc -3'
miRNA:   3'- gCAC------CCGGaCCuUCUCCGGUACUugC- -5'
18393 3' -56.4 NC_004681.1 + 49651 0.7 0.485192
Target:  5'- --cGGGCCUgcccgcGGggGaAGGCCA-GGGCGa -3'
miRNA:   3'- gcaCCCGGA------CCuuC-UCCGGUaCUUGC- -5'
18393 3' -56.4 NC_004681.1 + 53605 0.71 0.465513
Target:  5'- aGUGGGU--GGAAGAGGCCca-GACGg -3'
miRNA:   3'- gCACCCGgaCCUUCUCCGGuacUUGC- -5'
18393 3' -56.4 NC_004681.1 + 69500 0.71 0.431177
Target:  5'- aGUGGGUuaCUuGAGGAGGCCAugcuuucucaauuccUGGACGa -3'
miRNA:   3'- gCACCCG--GAcCUUCUCCGGU---------------ACUUGC- -5'
18393 3' -56.4 NC_004681.1 + 65811 0.76 0.242335
Target:  5'- uGUcGGCCUcgcuGAGGAGGUCAUGAGCGg -3'
miRNA:   3'- gCAcCCGGAc---CUUCUCCGGUACUUGC- -5'
18393 3' -56.4 NC_004681.1 + 14831 1.1 0.001043
Target:  5'- gCGUGGGCCUGGAAGAGGCCAUGAACGg -3'
miRNA:   3'- -GCACCCGGACCUUCUCCGGUACUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.