Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18393 | 3' | -56.4 | NC_004681.1 | + | 70291 | 0.66 | 0.716017 |
Target: 5'- --cGGGCCagacgUGGAAG-GGCagacagCAUGAGCGu -3' miRNA: 3'- gcaCCCGG-----ACCUUCuCCG------GUACUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 69500 | 0.71 | 0.431177 |
Target: 5'- aGUGGGUuaCUuGAGGAGGCCAugcuuucucaauuccUGGACGa -3' miRNA: 3'- gCACCCG--GAcCUUCUCCGGU---------------ACUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 65811 | 0.76 | 0.242335 |
Target: 5'- uGUcGGCCUcgcuGAGGAGGUCAUGAGCGg -3' miRNA: 3'- gCAcCCGGAc---CUUCUCCGGUACUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 61691 | 0.67 | 0.684526 |
Target: 5'- aGUGGGUgcagucaaugugCUuccuuguucGGAGGGGGCCAUGAu-- -3' miRNA: 3'- gCACCCG------------GA---------CCUUCUCCGGUACUugc -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 58815 | 0.66 | 0.75686 |
Target: 5'- -cUGGGCCUcacccGGAcAGAGGCCAacAACc -3' miRNA: 3'- gcACCCGGA-----CCU-UCUCCGGUacUUGc -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 54377 | 0.66 | 0.735615 |
Target: 5'- gGUGGGCgaGGAccagcgccucuucGGcGGUCGUGAuGCGg -3' miRNA: 3'- gCACCCGgaCCU-------------UCuCCGGUACU-UGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 53605 | 0.71 | 0.465513 |
Target: 5'- aGUGGGU--GGAAGAGGCCca-GACGg -3' miRNA: 3'- gCACCCGgaCCUUCUCCGGuacUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 49651 | 0.7 | 0.485192 |
Target: 5'- --cGGGCCUgcccgcGGggGaAGGCCA-GGGCGa -3' miRNA: 3'- gcaCCCGGA------CCuuC-UCCGGUaCUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 42284 | 0.69 | 0.577928 |
Target: 5'- ---cGGCCUGGAAGAaGGCCcagcucggGAGCa -3' miRNA: 3'- gcacCCGGACCUUCU-CCGGua------CUUGc -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 38429 | 0.68 | 0.620529 |
Target: 5'- --aGGGCCgcgaGGAAGAGaGCgAgGAACGa -3' miRNA: 3'- gcaCCCGGa---CCUUCUC-CGgUaCUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 25273 | 0.67 | 0.684526 |
Target: 5'- --gGGGCCUGaccGGGGCCAcUGAAUa -3' miRNA: 3'- gcaCCCGGACcuuCUCCGGU-ACUUGc -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 18448 | 0.67 | 0.663279 |
Target: 5'- --aGGGCaUGGAGGucgccaaccGGGCCAUGAAg- -3' miRNA: 3'- gcaCCCGgACCUUC---------UCCGGUACUUgc -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 14831 | 1.1 | 0.001043 |
Target: 5'- gCGUGGGCCUGGAAGAGGCCAUGAACGg -3' miRNA: 3'- -GCACCCGGACCUUCUCCGGUACUUGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 9076 | 0.67 | 0.663279 |
Target: 5'- gGUGGcGCCgacaGcGAGGAGGCCGaGGagGCGg -3' miRNA: 3'- gCACC-CGGa---C-CUUCUCCGGUaCU--UGC- -5' |
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18393 | 3' | -56.4 | NC_004681.1 | + | 7569 | 0.69 | 0.577928 |
Target: 5'- gGUGgaggacGGCC-GG-GGAGGCCGUGAugGc -3' miRNA: 3'- gCAC------CCGGaCCuUCUCCGGUACUugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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