miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18393 5' -55.7 NC_004681.1 + 62406 0.66 0.808216
Target:  5'- aACCACCa--GUCGgugcGCUUCCA--UCCCg -3'
miRNA:   3'- -UGGUGGgacCAGC----UGAAGGUguAGGG- -5'
18393 5' -55.7 NC_004681.1 + 5906 0.66 0.807296
Target:  5'- uGCCGCaguaCCaGGUUGGggcggccagcguuCUUCCACAUCgCCg -3'
miRNA:   3'- -UGGUG----GGaCCAGCU-------------GAAGGUGUAG-GG- -5'
18393 5' -55.7 NC_004681.1 + 22558 0.66 0.804524
Target:  5'- gGCCACCCagaagauggucugGGUCGcCagCCGCAUCa- -3'
miRNA:   3'- -UGGUGGGa------------CCAGCuGaaGGUGUAGgg -5'
18393 5' -55.7 NC_004681.1 + 59852 0.66 0.798935
Target:  5'- uCCACCUcGG-CGACUgCCgggACAUCCUc -3'
miRNA:   3'- uGGUGGGaCCaGCUGAaGG---UGUAGGG- -5'
18393 5' -55.7 NC_004681.1 + 49990 0.66 0.789488
Target:  5'- cAUCACCCUGGa-GACca-C-CAUCCCg -3'
miRNA:   3'- -UGGUGGGACCagCUGaagGuGUAGGG- -5'
18393 5' -55.7 NC_004681.1 + 8329 0.66 0.789488
Target:  5'- uCC-CCgaGGUCGAggUCCGCAaCCUg -3'
miRNA:   3'- uGGuGGgaCCAGCUgaAGGUGUaGGG- -5'
18393 5' -55.7 NC_004681.1 + 44835 0.66 0.779888
Target:  5'- gGCgGCCCccGuGUCGGCUucuucUCCAUGUUCCc -3'
miRNA:   3'- -UGgUGGGa-C-CAGCUGA-----AGGUGUAGGG- -5'
18393 5' -55.7 NC_004681.1 + 44523 0.66 0.779888
Target:  5'- aGCCACgCUGGgCG-Cg--CGCGUCCCa -3'
miRNA:   3'- -UGGUGgGACCaGCuGaagGUGUAGGG- -5'
18393 5' -55.7 NC_004681.1 + 20537 0.66 0.770143
Target:  5'- gACCACCUUGcuGUCGAUggUCGCG-CCUg -3'
miRNA:   3'- -UGGUGGGAC--CAGCUGaaGGUGUaGGG- -5'
18393 5' -55.7 NC_004681.1 + 3468 0.66 0.760265
Target:  5'- cCCACCgUGGa-GACggUCUGCAUCCa -3'
miRNA:   3'- uGGUGGgACCagCUGa-AGGUGUAGGg -5'
18393 5' -55.7 NC_004681.1 + 29496 0.66 0.760265
Target:  5'- gACCACCUcGGU-GGCUgucacgUUCGCAUCCa -3'
miRNA:   3'- -UGGUGGGaCCAgCUGA------AGGUGUAGGg -5'
18393 5' -55.7 NC_004681.1 + 46174 0.66 0.760265
Target:  5'- cGCgGCUUcgcGGcCGACUUCCAUGUCCa -3'
miRNA:   3'- -UGgUGGGa--CCaGCUGAAGGUGUAGGg -5'
18393 5' -55.7 NC_004681.1 + 61626 0.66 0.760265
Target:  5'- cCCGCCCUGGaagaGGCgaCCAUcgCCa -3'
miRNA:   3'- uGGUGGGACCag--CUGaaGGUGuaGGg -5'
18393 5' -55.7 NC_004681.1 + 8391 0.66 0.760265
Target:  5'- gGCCGuCCUUGG-CGGCgUCCGCG-CCa -3'
miRNA:   3'- -UGGU-GGGACCaGCUGaAGGUGUaGGg -5'
18393 5' -55.7 NC_004681.1 + 21430 0.67 0.750262
Target:  5'- cGCCGCUgcGGUCGA---CCACGUCCa -3'
miRNA:   3'- -UGGUGGgaCCAGCUgaaGGUGUAGGg -5'
18393 5' -55.7 NC_004681.1 + 2321 0.67 0.750262
Target:  5'- -gCACCgaGGUCGgcgcccACUUCUGCGUgCCg -3'
miRNA:   3'- ugGUGGgaCCAGC------UGAAGGUGUAgGG- -5'
18393 5' -55.7 NC_004681.1 + 24976 0.67 0.740147
Target:  5'- cGCCGCCCucgccauugcUGGUgagggagccuUGGCggCCGCcgCCCg -3'
miRNA:   3'- -UGGUGGG----------ACCA----------GCUGaaGGUGuaGGG- -5'
18393 5' -55.7 NC_004681.1 + 33482 0.67 0.740147
Target:  5'- gGCUgAUCCUGGUggcCGuCUUCCucaugcuCAUCCCg -3'
miRNA:   3'- -UGG-UGGGACCA---GCuGAAGGu------GUAGGG- -5'
18393 5' -55.7 NC_004681.1 + 70870 0.67 0.740147
Target:  5'- aGCCAUCCuUGcGUUGACUgUCCGCAaUCgCg -3'
miRNA:   3'- -UGGUGGG-AC-CAGCUGA-AGGUGU-AGgG- -5'
18393 5' -55.7 NC_004681.1 + 32369 0.67 0.740147
Target:  5'- uCCACCCccaGGUCGAUggCCuugaguuCGUCCg -3'
miRNA:   3'- uGGUGGGa--CCAGCUGaaGGu------GUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.