miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18394 3' -56 NC_004681.1 + 54822 0.66 0.77974
Target:  5'- aCCAGaaCGacaucCCCuUCGACCAGCUCAUc -3'
miRNA:   3'- -GGUUccGC-----GGGuAGCUGGUCGAGUAc -5'
18394 3' -56 NC_004681.1 + 12457 0.66 0.77974
Target:  5'- gUCGAGGC-CCCGgccaCGAgCGGUUCGUa -3'
miRNA:   3'- -GGUUCCGcGGGUa---GCUgGUCGAGUAc -5'
18394 3' -56 NC_004681.1 + 39887 0.66 0.77974
Target:  5'- aCCAggcGGGCGgagaccCCCAgcgcgCGGCCAGCUg--- -3'
miRNA:   3'- -GGU---UCCGC------GGGUa----GCUGGUCGAguac -5'
18394 3' -56 NC_004681.1 + 9190 0.66 0.779739
Target:  5'- gCCAGcGGCGCCgGUgaCGACgCGGC-CAUa -3'
miRNA:   3'- -GGUU-CCGCGGgUA--GCUG-GUCGaGUAc -5'
18394 3' -56 NC_004681.1 + 44377 0.66 0.760027
Target:  5'- cCCuacGGGCGCCCGUcCGGgCAaCUCAc- -3'
miRNA:   3'- -GGu--UCCGCGGGUA-GCUgGUcGAGUac -5'
18394 3' -56 NC_004681.1 + 8887 0.66 0.739817
Target:  5'- gUCAGGGCGUuggcgaCCuugcCGACCuGCUCGUa -3'
miRNA:   3'- -GGUUCCGCG------GGua--GCUGGuCGAGUAc -5'
18394 3' -56 NC_004681.1 + 30134 0.66 0.729553
Target:  5'- aCAAGGCgGCCUGUgGGuCgGGCUCAg- -3'
miRNA:   3'- gGUUCCG-CGGGUAgCU-GgUCGAGUac -5'
18394 3' -56 NC_004681.1 + 52859 0.66 0.729553
Target:  5'- -gAAGGCuGgCCAUCGGCCuGCccgCGUGc -3'
miRNA:   3'- ggUUCCG-CgGGUAGCUGGuCGa--GUAC- -5'
18394 3' -56 NC_004681.1 + 16960 0.66 0.729552
Target:  5'- gCGAGcaCGCUUcUCGGCCAGCUUGUGc -3'
miRNA:   3'- gGUUCc-GCGGGuAGCUGGUCGAGUAC- -5'
18394 3' -56 NC_004681.1 + 30043 0.67 0.719195
Target:  5'- gCCGccGCGgCCAUCGGCCucggAGCUCc-- -3'
miRNA:   3'- -GGUucCGCgGGUAGCUGG----UCGAGuac -5'
18394 3' -56 NC_004681.1 + 18589 0.67 0.707708
Target:  5'- cCCucGGCGCCgAUacCGAUCAGCuggccaccgaacuUCAUGg -3'
miRNA:   3'- -GGuuCCGCGGgUA--GCUGGUCG-------------AGUAC- -5'
18394 3' -56 NC_004681.1 + 24946 0.67 0.677051
Target:  5'- uUCGAGGC-CCCGUCaucauCCAGUUCAc- -3'
miRNA:   3'- -GGUUCCGcGGGUAGcu---GGUCGAGUac -5'
18394 3' -56 NC_004681.1 + 7050 0.68 0.666388
Target:  5'- --uAGGCGUCCAUC-AUCAGCUUGUc -3'
miRNA:   3'- gguUCCGCGGGUAGcUGGUCGAGUAc -5'
18394 3' -56 NC_004681.1 + 14951 0.68 0.655695
Target:  5'- aCCAGGGUGgUgGUCaGACC-GUUCAUGg -3'
miRNA:   3'- -GGUUCCGCgGgUAG-CUGGuCGAGUAC- -5'
18394 3' -56 NC_004681.1 + 56809 0.68 0.655695
Target:  5'- aCCAucGGGUGUCCAgcCGAUgAGCUCGc- -3'
miRNA:   3'- -GGU--UCCGCGGGUa-GCUGgUCGAGUac -5'
18394 3' -56 NC_004681.1 + 52867 0.68 0.644981
Target:  5'- aCCGAGGUGCuguccgCCAggUCGACCAuGCagcgCGUGa -3'
miRNA:   3'- -GGUUCCGCG------GGU--AGCUGGU-CGa---GUAC- -5'
18394 3' -56 NC_004681.1 + 23938 0.68 0.623529
Target:  5'- gCGcGGCGCCgGaUCGGCguGCUCAa- -3'
miRNA:   3'- gGUuCCGCGGgU-AGCUGguCGAGUac -5'
18394 3' -56 NC_004681.1 + 32130 0.68 0.61281
Target:  5'- aCCGcGGCgGCCCAcgccaaCGACCAGCUgGa- -3'
miRNA:   3'- -GGUuCCG-CGGGUa-----GCUGGUCGAgUac -5'
18394 3' -56 NC_004681.1 + 17580 0.68 0.612809
Target:  5'- uCCGAGGcCGCCCAUgccaGGCacgaAGC-CAUGa -3'
miRNA:   3'- -GGUUCC-GCGGGUAg---CUGg---UCGaGUAC- -5'
18394 3' -56 NC_004681.1 + 23765 0.68 0.612809
Target:  5'- --cGGGCGCgUAggaGGCCAGCUCgAUGg -3'
miRNA:   3'- gguUCCGCGgGUag-CUGGUCGAG-UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.