Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18395 | 3' | -57.6 | NC_004681.1 | + | 15058 | 1.09 | 0.000944 |
Target: 5'- uGCUCGCGCAGAUGACCCAGACGGGUGc -3' miRNA: 3'- -CGAGCGCGUCUACUGGGUCUGCCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 48498 | 0.77 | 0.162256 |
Target: 5'- aCUCGcCGCGGAgaACCCGGAgCGGGUGg -3' miRNA: 3'- cGAGC-GCGUCUacUGGGUCU-GCCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 54440 | 0.74 | 0.269954 |
Target: 5'- aCUUGCGCAGGUacuuaGGCCaCAGGUGGGUGg -3' miRNA: 3'- cGAGCGCGUCUA-----CUGG-GUCUGCCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 2759 | 0.73 | 0.283425 |
Target: 5'- cGCUCGgagaCGUAGGaGACCCGGGCuaGGGUGc -3' miRNA: 3'- -CGAGC----GCGUCUaCUGGGUCUG--CCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 5670 | 0.71 | 0.392528 |
Target: 5'- -gUUGCGCuuGAUggcGACCCGuGACGGGUGc -3' miRNA: 3'- cgAGCGCGu-CUA---CUGGGU-CUGCCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 20024 | 0.7 | 0.437586 |
Target: 5'- -gUCGaacCGCGGA-GACCaGGACGGGUGg -3' miRNA: 3'- cgAGC---GCGUCUaCUGGgUCUGCCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 4206 | 0.69 | 0.524483 |
Target: 5'- uGCUUGCGCauugccucccacgAGAggaagcGACCCAGcGCGGGg- -3' miRNA: 3'- -CGAGCGCG-------------UCUa-----CUGGGUC-UGCCCac -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 45038 | 0.69 | 0.525499 |
Target: 5'- aGCUCGCGguGgcGGCuCCAccgcGugGGGg- -3' miRNA: 3'- -CGAGCGCguCuaCUG-GGU----CugCCCac -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 457 | 0.68 | 0.545982 |
Target: 5'- gGCUCGUccucGCGGAUGgcGCCCAuGAC-GGUGc -3' miRNA: 3'- -CGAGCG----CGUCUAC--UGGGU-CUGcCCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 27704 | 0.68 | 0.545982 |
Target: 5'- ---aGCGCcaccgaGGGUGACCCAGGCGccuguGGUGc -3' miRNA: 3'- cgagCGCG------UCUACUGGGUCUGC-----CCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 74034 | 0.68 | 0.55632 |
Target: 5'- uGCUCGCGCGGAUGcUCCguGGAgCGGa-- -3' miRNA: 3'- -CGAGCGCGUCUACuGGG--UCU-GCCcac -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 33248 | 0.67 | 0.650994 |
Target: 5'- -aUCGCGCAGGUGAU----GCGGGUc -3' miRNA: 3'- cgAGCGCGUCUACUGggucUGCCCAc -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 11053 | 0.66 | 0.672077 |
Target: 5'- gGCUCGUGU-GAUGGCCaCGGACuacaaguccuGGUGg -3' miRNA: 3'- -CGAGCGCGuCUACUGG-GUCUGc---------CCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 67168 | 0.66 | 0.672077 |
Target: 5'- uCUCGCGCAacuGGuUGACCCAGAgCGucagcguguuGGUGc -3' miRNA: 3'- cGAGCGCGU---CU-ACUGGGUCU-GC----------CCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 7344 | 0.66 | 0.68257 |
Target: 5'- gGC-CGCGUcguGGAUGGCCUGGagaaGCGcGGUGu -3' miRNA: 3'- -CGaGCGCG---UCUACUGGGUC----UGC-CCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 39193 | 0.66 | 0.68257 |
Target: 5'- uGCcCGCGCAGGUGGCCaccagggcuugCAcGGCGcGGUc -3' miRNA: 3'- -CGaGCGCGUCUACUGG-----------GU-CUGC-CCAc -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 53347 | 0.66 | 0.69302 |
Target: 5'- cGCUCaCGCA--UGGcCCCAGACGaGUGg -3' miRNA: 3'- -CGAGcGCGUcuACU-GGGUCUGCcCAC- -5' |
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18395 | 3' | -57.6 | NC_004681.1 | + | 29478 | 0.66 | 0.703415 |
Target: 5'- ---gGCGCuGAUGuugCCAGACGaGGUGa -3' miRNA: 3'- cgagCGCGuCUACug-GGUCUGC-CCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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