miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18395 5' -50.8 NC_004681.1 + 61258 0.66 0.958289
Target:  5'- cCCAGUugcccugggCGUCGCGGcGGCGUUCGuuGGACa -3'
miRNA:   3'- uGGUCA---------GCAGCGUC-UUGUAGGC--UUUG- -5'
18395 5' -50.8 NC_004681.1 + 25997 0.66 0.95415
Target:  5'- cCCGGUCGaugUCGCuGAGCuugaacUCCGggGu -3'
miRNA:   3'- uGGUCAGC---AGCGuCUUGu-----AGGCuuUg -5'
18395 5' -50.8 NC_004681.1 + 32422 0.66 0.95415
Target:  5'- cCCGGUUGUgGCGGAcCuugaCGAAGCg -3'
miRNA:   3'- uGGUCAGCAgCGUCUuGuag-GCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 25887 0.66 0.94506
Target:  5'- gGCU--UCGUCGCcGAGCcgAUCCGAAAg -3'
miRNA:   3'- -UGGucAGCAGCGuCUUG--UAGGCUUUg -5'
18395 5' -50.8 NC_004681.1 + 4618 0.67 0.934864
Target:  5'- aGCCucgauGUCGUCGUAGAccACGU-CGAAGu -3'
miRNA:   3'- -UGGu----CAGCAGCGUCU--UGUAgGCUUUg -5'
18395 5' -50.8 NC_004681.1 + 59634 0.67 0.923542
Target:  5'- uCCGGcaCGUCcacaaGCGG-GCGUCCGAAGCg -3'
miRNA:   3'- uGGUCa-GCAG-----CGUCuUGUAGGCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 63242 0.67 0.923542
Target:  5'- gGCgAGUCGUCGCAGAcccACcccuccCCGAu-- -3'
miRNA:   3'- -UGgUCAGCAGCGUCU---UGua----GGCUuug -5'
18395 5' -50.8 NC_004681.1 + 33892 0.67 0.923542
Target:  5'- uCCAcUCGUCGUAGAACucAUCgaaUGAGACa -3'
miRNA:   3'- uGGUcAGCAGCGUCUUG--UAG---GCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 3309 0.68 0.904449
Target:  5'- cCCGGUuggUGUUGCAGAACucgacaCGAGGCg -3'
miRNA:   3'- uGGUCA---GCAGCGUCUUGuag---GCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 9322 0.68 0.897528
Target:  5'- cCCGGUCaacggCGgcaAGAACAUCUGggGCg -3'
miRNA:   3'- uGGUCAGca---GCg--UCUUGUAGGCuuUG- -5'
18395 5' -50.8 NC_004681.1 + 50576 0.68 0.882873
Target:  5'- uCCAGUUGgCGCAGGACAcggUCGggGu -3'
miRNA:   3'- uGGUCAGCaGCGUCUUGUa--GGCuuUg -5'
18395 5' -50.8 NC_004681.1 + 9323 0.69 0.875149
Target:  5'- cCCAGUCG-CGCGGGuucaucaccacaGCGUUCGggGu -3'
miRNA:   3'- uGGUCAGCaGCGUCU------------UGUAGGCuuUg -5'
18395 5' -50.8 NC_004681.1 + 39250 0.69 0.875149
Target:  5'- uGCCGGUC-UCGguGAACAgcaCGAugAGCg -3'
miRNA:   3'- -UGGUCAGcAGCguCUUGUag-GCU--UUG- -5'
18395 5' -50.8 NC_004681.1 + 50715 0.69 0.867168
Target:  5'- cCCuGUagcUCGUAGAGCGUCgGAAACg -3'
miRNA:   3'- uGGuCAgc-AGCGUCUUGUAGgCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 57502 0.7 0.804781
Target:  5'- cGCCAG-CaUCGCGGAGCGcgCUGAGAUg -3'
miRNA:   3'- -UGGUCaGcAGCGUCUUGUa-GGCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 47736 0.73 0.668032
Target:  5'- -gCAGUCGUCGUAGAGgCuUCCGcAACu -3'
miRNA:   3'- ugGUCAGCAGCGUCUU-GuAGGCuUUG- -5'
18395 5' -50.8 NC_004681.1 + 33298 0.73 0.668032
Target:  5'- cGCCGGUCGcgcCGCGGuguACG-CCGGGACg -3'
miRNA:   3'- -UGGUCAGCa--GCGUCu--UGUaGGCUUUG- -5'
18395 5' -50.8 NC_004681.1 + 45372 0.74 0.623603
Target:  5'- cGCCGGUCacggGCGGGGCGUCCGguGCu -3'
miRNA:   3'- -UGGUCAGcag-CGUCUUGUAGGCuuUG- -5'
18395 5' -50.8 NC_004681.1 + 15093 1.11 0.003123
Target:  5'- gACCAGUCGUCGCAGAACAUCCGAAACa -3'
miRNA:   3'- -UGGUCAGCAGCGUCUUGUAGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.