Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18395 | 5' | -50.8 | NC_004681.1 | + | 3309 | 0.68 | 0.904449 |
Target: 5'- cCCGGUuggUGUUGCAGAACucgacaCGAGGCg -3' miRNA: 3'- uGGUCA---GCAGCGUCUUGuag---GCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 4618 | 0.67 | 0.934864 |
Target: 5'- aGCCucgauGUCGUCGUAGAccACGU-CGAAGu -3' miRNA: 3'- -UGGu----CAGCAGCGUCU--UGUAgGCUUUg -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 9322 | 0.68 | 0.897528 |
Target: 5'- cCCGGUCaacggCGgcaAGAACAUCUGggGCg -3' miRNA: 3'- uGGUCAGca---GCg--UCUUGUAGGCuuUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 9323 | 0.69 | 0.875149 |
Target: 5'- cCCAGUCG-CGCGGGuucaucaccacaGCGUUCGggGu -3' miRNA: 3'- uGGUCAGCaGCGUCU------------UGUAGGCuuUg -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 15093 | 1.11 | 0.003123 |
Target: 5'- gACCAGUCGUCGCAGAACAUCCGAAACa -3' miRNA: 3'- -UGGUCAGCAGCGUCUUGUAGGCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 25887 | 0.66 | 0.94506 |
Target: 5'- gGCU--UCGUCGCcGAGCcgAUCCGAAAg -3' miRNA: 3'- -UGGucAGCAGCGuCUUG--UAGGCUUUg -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 25997 | 0.66 | 0.95415 |
Target: 5'- cCCGGUCGaugUCGCuGAGCuugaacUCCGggGu -3' miRNA: 3'- uGGUCAGC---AGCGuCUUGu-----AGGCuuUg -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 32422 | 0.66 | 0.95415 |
Target: 5'- cCCGGUUGUgGCGGAcCuugaCGAAGCg -3' miRNA: 3'- uGGUCAGCAgCGUCUuGuag-GCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 33298 | 0.73 | 0.668032 |
Target: 5'- cGCCGGUCGcgcCGCGGuguACG-CCGGGACg -3' miRNA: 3'- -UGGUCAGCa--GCGUCu--UGUaGGCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 33892 | 0.67 | 0.923542 |
Target: 5'- uCCAcUCGUCGUAGAACucAUCgaaUGAGACa -3' miRNA: 3'- uGGUcAGCAGCGUCUUG--UAG---GCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 39250 | 0.69 | 0.875149 |
Target: 5'- uGCCGGUC-UCGguGAACAgcaCGAugAGCg -3' miRNA: 3'- -UGGUCAGcAGCguCUUGUag-GCU--UUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 45372 | 0.74 | 0.623603 |
Target: 5'- cGCCGGUCacggGCGGGGCGUCCGguGCu -3' miRNA: 3'- -UGGUCAGcag-CGUCUUGUAGGCuuUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 47736 | 0.73 | 0.668032 |
Target: 5'- -gCAGUCGUCGUAGAGgCuUCCGcAACu -3' miRNA: 3'- ugGUCAGCAGCGUCUU-GuAGGCuUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 50576 | 0.68 | 0.882873 |
Target: 5'- uCCAGUUGgCGCAGGACAcggUCGggGu -3' miRNA: 3'- uGGUCAGCaGCGUCUUGUa--GGCuuUg -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 50715 | 0.69 | 0.867168 |
Target: 5'- cCCuGUagcUCGUAGAGCGUCgGAAACg -3' miRNA: 3'- uGGuCAgc-AGCGUCUUGUAGgCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 57502 | 0.7 | 0.804781 |
Target: 5'- cGCCAG-CaUCGCGGAGCGcgCUGAGAUg -3' miRNA: 3'- -UGGUCaGcAGCGUCUUGUa-GGCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 59634 | 0.67 | 0.923542 |
Target: 5'- uCCGGcaCGUCcacaaGCGG-GCGUCCGAAGCg -3' miRNA: 3'- uGGUCa-GCAG-----CGUCuUGUAGGCUUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 61258 | 0.66 | 0.958289 |
Target: 5'- cCCAGUugcccugggCGUCGCGGcGGCGUUCGuuGGACa -3' miRNA: 3'- uGGUCA---------GCAGCGUC-UUGUAGGC--UUUG- -5' |
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18395 | 5' | -50.8 | NC_004681.1 | + | 63242 | 0.67 | 0.923542 |
Target: 5'- gGCgAGUCGUCGCAGAcccACcccuccCCGAu-- -3' miRNA: 3'- -UGgUCAGCAGCGUCU---UGua----GGCUuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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