miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 3' -52.2 NC_004681.1 + 45493 0.66 0.930339
Target:  5'- aGCGcUUCACCgcUGCCcuugAGguGCUcccCCGCc -3'
miRNA:   3'- -CGC-AAGUGG--AUGG----UCguCGAuu-GGCG- -5'
18397 3' -52.2 NC_004681.1 + 12978 0.66 0.930339
Target:  5'- aCGUcgCGCUcACCGGCuacaccGCUGgcACCGCg -3'
miRNA:   3'- cGCAa-GUGGaUGGUCGu-----CGAU--UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 42344 0.66 0.930339
Target:  5'- aGCGcUCcaauGCC-ACCAGCcGCaaguGCCGCg -3'
miRNA:   3'- -CGCaAG----UGGaUGGUCGuCGau--UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 49329 0.66 0.930339
Target:  5'- ---cUCACCguccGCCacGGCGGC--GCCGCg -3'
miRNA:   3'- cgcaAGUGGa---UGG--UCGUCGauUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 15374 0.66 0.930339
Target:  5'- gGCGUUCGCCgacgccauCCAGaaCGGCacccuguCCGCc -3'
miRNA:   3'- -CGCAAGUGGau------GGUC--GUCGauu----GGCG- -5'
18397 3' -52.2 NC_004681.1 + 52244 0.66 0.924647
Target:  5'- ----cCACC-ACCAuguGCAGCUGcuugGCCGCc -3'
miRNA:   3'- cgcaaGUGGaUGGU---CGUCGAU----UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 56849 0.66 0.924647
Target:  5'- gGCGUcaagCAguUCUGCCAGguGCgugGACUGa -3'
miRNA:   3'- -CGCAa---GU--GGAUGGUCguCGa--UUGGCg -5'
18397 3' -52.2 NC_004681.1 + 33376 0.66 0.918679
Target:  5'- gGCGUcgaUgACac-CCGGCAGCggAACUGCg -3'
miRNA:   3'- -CGCA---AgUGgauGGUCGUCGa-UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 69788 0.66 0.918679
Target:  5'- cGCGcgCACgUACCcauGGuUAGCUgaGACCGUg -3'
miRNA:   3'- -CGCaaGUGgAUGG---UC-GUCGA--UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 17586 0.66 0.918679
Target:  5'- cGCGgccaagCGCCguggUAUCGGCGGCUcGGgCGCg -3'
miRNA:   3'- -CGCaa----GUGG----AUGGUCGUCGA-UUgGCG- -5'
18397 3' -52.2 NC_004681.1 + 40366 0.66 0.918679
Target:  5'- gGUGaaCACC-GCCAGCaagAGCggcACCGCc -3'
miRNA:   3'- -CGCaaGUGGaUGGUCG---UCGau-UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 32123 0.66 0.917452
Target:  5'- aGCGgUCACCgcggcggcccacGCCAacgacCAGCUgGACCGCg -3'
miRNA:   3'- -CGCaAGUGGa-----------UGGUc----GUCGA-UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 31977 0.66 0.911795
Target:  5'- aGCGUgaaccagaUCAUC-GCCAGCAucggcucGCUGaucggcGCCGCg -3'
miRNA:   3'- -CGCA--------AGUGGaUGGUCGU-------CGAU------UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 20037 0.66 0.905916
Target:  5'- cGCGgggagCACCUGCguGUugAGCaGGcCCGCg -3'
miRNA:   3'- -CGCaa---GUGGAUGguCG--UCGaUU-GGCG- -5'
18397 3' -52.2 NC_004681.1 + 13102 0.66 0.905916
Target:  5'- cGCGgccacgUCGuCCgcggUGCCAGCGGUgUAGCCGg -3'
miRNA:   3'- -CGCa-----AGU-GG----AUGGUCGUCG-AUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 45340 0.66 0.905916
Target:  5'- aCGagCACCUGCCccuuGUAGUuccgcuUGACCGUg -3'
miRNA:   3'- cGCaaGUGGAUGGu---CGUCG------AUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 24758 0.66 0.905916
Target:  5'- ---aUCACCacgACCcGCAGCgcAUCGCg -3'
miRNA:   3'- cgcaAGUGGa--UGGuCGUCGauUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 54781 0.66 0.905916
Target:  5'- uCGUgacgaCACCUGCCGcGCAGac-ACCGUc -3'
miRNA:   3'- cGCAa----GUGGAUGGU-CGUCgauUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 60665 0.66 0.905916
Target:  5'- aCGUUCGUCgGCCAGCGGCccgAGgCGUg -3'
miRNA:   3'- cGCAAGUGGaUGGUCGUCGa--UUgGCG- -5'
18397 3' -52.2 NC_004681.1 + 65260 0.67 0.899126
Target:  5'- aGCcaUCGCCUGCCuuGUGGUcguCCGCg -3'
miRNA:   3'- -CGcaAGUGGAUGGu-CGUCGauuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.