miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 3' -52.2 NC_004681.1 + 12579 0.67 0.899126
Target:  5'- cGCGgUCACCUugaAGguGUacgAACCGCu -3'
miRNA:   3'- -CGCaAGUGGAuggUCguCGa--UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 29703 0.67 0.899126
Target:  5'- gGCGUaggUCgACCgGCCGcgcGCAGCUGAUacaCGCg -3'
miRNA:   3'- -CGCA---AG-UGGaUGGU---CGUCGAUUG---GCG- -5'
18397 3' -52.2 NC_004681.1 + 65260 0.67 0.899126
Target:  5'- aGCcaUCGCCUGCCuuGUGGUcguCCGCg -3'
miRNA:   3'- -CGcaAGUGGAUGGu-CGUCGauuGGCG- -5'
18397 3' -52.2 NC_004681.1 + 61033 0.67 0.894214
Target:  5'- aGCGaUCcacaagugaguaaagACCUACagguacaucucguCGGCAcGCUGACCGCc -3'
miRNA:   3'- -CGCaAG---------------UGGAUG-------------GUCGU-CGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 38297 0.67 0.892069
Target:  5'- gGCGuUUCAuCCUGCuUGGCAGCUuGCaGCu -3'
miRNA:   3'- -CGC-AAGU-GGAUG-GUCGUCGAuUGgCG- -5'
18397 3' -52.2 NC_004681.1 + 52942 0.67 0.892069
Target:  5'- uGCGcuucaucgUCACCgacgugGCCuGGCAgGCUGGCgGCa -3'
miRNA:   3'- -CGCa-------AGUGGa-----UGG-UCGU-CGAUUGgCG- -5'
18397 3' -52.2 NC_004681.1 + 65240 0.67 0.892069
Target:  5'- cGCGgaCACCggagACgCGGUAGUUGuggcgGCCGUa -3'
miRNA:   3'- -CGCaaGUGGa---UG-GUCGUCGAU-----UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 7403 0.67 0.884747
Target:  5'- gGUGgaacgUCGCUgGCguGCAGCUcgUCGCa -3'
miRNA:   3'- -CGCa----AGUGGaUGguCGUCGAuuGGCG- -5'
18397 3' -52.2 NC_004681.1 + 5445 0.67 0.884747
Target:  5'- --cUUCACCgggaggcgUGCCAGCGcCUGugCGCg -3'
miRNA:   3'- cgcAAGUGG--------AUGGUCGUcGAUugGCG- -5'
18397 3' -52.2 NC_004681.1 + 16222 0.67 0.884747
Target:  5'- cGCGaa-GCCgaUACCcgacacagccguGGCGGCUGugCGCg -3'
miRNA:   3'- -CGCaagUGG--AUGG------------UCGUCGAUugGCG- -5'
18397 3' -52.2 NC_004681.1 + 28004 0.67 0.884747
Target:  5'- gGCGgcaguaguCCUACCAGCGGUggcagcaaGACCGa -3'
miRNA:   3'- -CGCaagu----GGAUGGUCGUCGa-------UUGGCg -5'
18397 3' -52.2 NC_004681.1 + 14710 0.67 0.877936
Target:  5'- uGCGcUCACCcgucgacucgaacucGCCAGcCAGCUuGCCGg -3'
miRNA:   3'- -CGCaAGUGGa--------------UGGUC-GUCGAuUGGCg -5'
18397 3' -52.2 NC_004681.1 + 50664 0.67 0.869333
Target:  5'- gGCGUuggguuUCGCCaGCCA-CAGCUucAGCgCGCg -3'
miRNA:   3'- -CGCA------AGUGGaUGGUcGUCGA--UUG-GCG- -5'
18397 3' -52.2 NC_004681.1 + 31287 0.68 0.861254
Target:  5'- gGCGUUgAU--GCCAGCGGauugauuGCCGCg -3'
miRNA:   3'- -CGCAAgUGgaUGGUCGUCgau----UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 25302 0.68 0.852935
Target:  5'- aGCGgUCGCCgccguUGCCAGCgccgccaggGGCcUGACCGg -3'
miRNA:   3'- -CGCaAGUGG-----AUGGUCG---------UCG-AUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 38631 0.68 0.844384
Target:  5'- ----aUAgCUACCuGUAGUUAACCGCu -3'
miRNA:   3'- cgcaaGUgGAUGGuCGUCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 61891 0.68 0.844384
Target:  5'- gGCGU--GCCUcaACCAGUuggcGCUGuggcACCGCg -3'
miRNA:   3'- -CGCAagUGGA--UGGUCGu---CGAU----UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 63670 0.68 0.835611
Target:  5'- aGCGUcgaaaugacCACCUGCaAGUGGUgcGCCGCg -3'
miRNA:   3'- -CGCAa--------GUGGAUGgUCGUCGauUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 5975 0.68 0.835611
Target:  5'- uGCaGUUCAUCgaACCcGcCAGCUcAACCGCg -3'
miRNA:   3'- -CG-CAAGUGGa-UGGuC-GUCGA-UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 22738 0.68 0.826623
Target:  5'- gGCGaUCugCUugCGcGCGGCgcugcCCGCg -3'
miRNA:   3'- -CGCaAGugGAugGU-CGUCGauu--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.