miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 3' -52.2 NC_004681.1 + 1174 0.69 0.778819
Target:  5'- gGCGcUCGCgCUGCCAG-GGCUccaucgGGCCGUa -3'
miRNA:   3'- -CGCaAGUG-GAUGGUCgUCGA------UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 3372 0.69 0.788728
Target:  5'- cCGUUcCGCCUG-CAGCggaagucugagaAGUUGGCCGCg -3'
miRNA:   3'- cGCAA-GUGGAUgGUCG------------UCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 5445 0.67 0.884747
Target:  5'- --cUUCACCgggaggcgUGCCAGCGcCUGugCGCg -3'
miRNA:   3'- cgcAAGUGG--------AUGGUCGUcGAUugGCG- -5'
18397 3' -52.2 NC_004681.1 + 5975 0.68 0.835611
Target:  5'- uGCaGUUCAUCgaACCcGcCAGCUcAACCGCg -3'
miRNA:   3'- -CG-CAAGUGGa-UGGuC-GUCGA-UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 7317 0.72 0.596334
Target:  5'- cGCGgugUCGCCguUACCGGCA-CcGGCCGCc -3'
miRNA:   3'- -CGCa--AGUGG--AUGGUCGUcGaUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 7403 0.67 0.884747
Target:  5'- gGUGgaacgUCGCUgGCguGCAGCUcgUCGCa -3'
miRNA:   3'- -CGCa----AGUGGaUGguCGUCGAuuGGCG- -5'
18397 3' -52.2 NC_004681.1 + 9893 0.69 0.768759
Target:  5'- aGUGacaUUCGC---CCAGCAGCUGGCCGa -3'
miRNA:   3'- -CGC---AAGUGgauGGUCGUCGAUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 12579 0.67 0.899126
Target:  5'- cGCGgUCACCUugaAGguGUacgAACCGCu -3'
miRNA:   3'- -CGCaAGUGGAuggUCguCGa--UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 12978 0.66 0.930339
Target:  5'- aCGUcgCGCUcACCGGCuacaccGCUGgcACCGCg -3'
miRNA:   3'- cGCAa-GUGGaUGGUCGu-----CGAU--UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 13102 0.66 0.905916
Target:  5'- cGCGgccacgUCGuCCgcggUGCCAGCGGUgUAGCCGg -3'
miRNA:   3'- -CGCa-----AGU-GG----AUGGUCGUCG-AUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 14330 0.68 0.826623
Target:  5'- cGCGUcagcUCAgCCUGgUAGCGGCguagcGCCGUu -3'
miRNA:   3'- -CGCA----AGU-GGAUgGUCGUCGau---UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 14544 0.75 0.470265
Target:  5'- gGCGUUCGCCUccGCCucgcgGGCGGCguagauuuucgccucGGCCGCc -3'
miRNA:   3'- -CGCAAGUGGA--UGG-----UCGUCGa--------------UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 14577 0.7 0.748227
Target:  5'- cGCagUCGCCUucggcACCGGCaAGCUGGCUGg -3'
miRNA:   3'- -CGcaAGUGGA-----UGGUCG-UCGAUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 14710 0.67 0.877936
Target:  5'- uGCGcUCACCcgucgacucgaacucGCCAGcCAGCUuGCCGg -3'
miRNA:   3'- -CGCaAGUGGa--------------UGGUC-GUCGAuUGGCg -5'
18397 3' -52.2 NC_004681.1 + 15338 1.13 0.001546
Target:  5'- gGCGUUCACCUACCAGCAGCUAACCGCc -3'
miRNA:   3'- -CGCAAGUGGAUGGUCGUCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 15374 0.66 0.930339
Target:  5'- gGCGUUCGCCgacgccauCCAGaaCGGCacccuguCCGCc -3'
miRNA:   3'- -CGCAAGUGGau------GGUC--GUCGauu----GGCG- -5'
18397 3' -52.2 NC_004681.1 + 15458 0.74 0.499917
Target:  5'- gGCGaaCGCCuUACCcucGGCGGUUAGCUGCu -3'
miRNA:   3'- -CGCaaGUGG-AUGG---UCGUCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 16091 0.7 0.758557
Target:  5'- gGCG-UCACC-ACC-GCGGCgcgcacAGCCGCc -3'
miRNA:   3'- -CGCaAGUGGaUGGuCGUCGa-----UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 16126 0.69 0.778819
Target:  5'- aGCGgcggCGCCcuUGCCAGCAGCcggGACgaUGCc -3'
miRNA:   3'- -CGCaa--GUGG--AUGGUCGUCGa--UUG--GCG- -5'
18397 3' -52.2 NC_004681.1 + 16222 0.67 0.884747
Target:  5'- cGCGaa-GCCgaUACCcgacacagccguGGCGGCUGugCGCg -3'
miRNA:   3'- -CGCaagUGG--AUGG------------UCGUCGAUugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.