miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 3' -52.2 NC_004681.1 + 63670 0.68 0.835611
Target:  5'- aGCGUcgaaaugacCACCUGCaAGUGGUgcGCCGCg -3'
miRNA:   3'- -CGCAa--------GUGGAUGgUCGUCGauUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 9893 0.69 0.768759
Target:  5'- aGUGacaUUCGC---CCAGCAGCUGGCCGa -3'
miRNA:   3'- -CGC---AAGUGgauGGUCGUCGAUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 25070 0.69 0.775817
Target:  5'- cGCGggcggCACCUcGCuCAGCcuccucggcaccucGGUUGGCCGCg -3'
miRNA:   3'- -CGCaa---GUGGA-UG-GUCG--------------UCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 3372 0.69 0.788728
Target:  5'- cCGUUcCGCCUG-CAGCggaagucugagaAGUUGGCCGCg -3'
miRNA:   3'- cGCAA-GUGGAUgGUCG------------UCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 56417 0.68 0.826623
Target:  5'- aGCGcaCACCUGuuGGaGGCgGGCCGCg -3'
miRNA:   3'- -CGCaaGUGGAUggUCgUCGaUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 70068 0.68 0.826623
Target:  5'- aGCGUcucUCugGCUUGCCAGUAgGCaucagaGACCGCg -3'
miRNA:   3'- -CGCA---AG--UGGAUGGUCGU-CGa-----UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 34061 0.68 0.826623
Target:  5'- cGgGUUCGCCccgagUCAGauugagaAGCUGGCCGCc -3'
miRNA:   3'- -CgCAAGUGGau---GGUCg------UCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 22625 0.68 0.826623
Target:  5'- aCGgaCACC-GCgGGCAGC--GCCGCg -3'
miRNA:   3'- cGCaaGUGGaUGgUCGUCGauUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 5975 0.68 0.835611
Target:  5'- uGCaGUUCAUCgaACCcGcCAGCUcAACCGCg -3'
miRNA:   3'- -CG-CAAGUGGa-UGGuC-GUCGA-UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 16091 0.7 0.758557
Target:  5'- gGCG-UCACC-ACC-GCGGCgcgcacAGCCGCc -3'
miRNA:   3'- -CGCaAGUGGaUGGuCGUCGa-----UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 14577 0.7 0.748227
Target:  5'- cGCagUCGCCUucggcACCGGCaAGCUGGCUGg -3'
miRNA:   3'- -CGcaAGUGGA-----UGGUCG-UCGAUUGGCg -5'
18397 3' -52.2 NC_004681.1 + 24378 0.7 0.727223
Target:  5'- cGCGUUCuacgugaacgUCUACCAGguGCUGgaaaACgGCg -3'
miRNA:   3'- -CGCAAGu---------GGAUGGUCguCGAU----UGgCG- -5'
18397 3' -52.2 NC_004681.1 + 39155 0.76 0.392627
Target:  5'- uGCuGUUCACCgagACCGGCAuCcgGGCCGCg -3'
miRNA:   3'- -CG-CAAGUGGa--UGGUCGUcGa-UUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 38941 0.75 0.469259
Target:  5'- cCGgcCACCgUGCaucuGCGGCUGACCGCg -3'
miRNA:   3'- cGCaaGUGG-AUGgu--CGUCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 60042 0.75 0.479374
Target:  5'- gGCGgcucccgCACCUGgCAcCGGCUGACCGUg -3'
miRNA:   3'- -CGCaa-----GUGGAUgGUcGUCGAUUGGCG- -5'
18397 3' -52.2 NC_004681.1 + 17631 0.73 0.552835
Target:  5'- cGCGUUCACgucgcacuaCUACCGGCccGCUGGCgGUu -3'
miRNA:   3'- -CGCAAGUG---------GAUGGUCGu-CGAUUGgCG- -5'
18397 3' -52.2 NC_004681.1 + 29765 0.73 0.585393
Target:  5'- cGCGacCugCUGCCAGguGC-AGCCaGCu -3'
miRNA:   3'- -CGCaaGugGAUGGUCguCGaUUGG-CG- -5'
18397 3' -52.2 NC_004681.1 + 69142 0.73 0.585393
Target:  5'- ---cUCGCCUACCGGCucGGCUAcaccACCGg -3'
miRNA:   3'- cgcaAGUGGAUGGUCG--UCGAU----UGGCg -5'
18397 3' -52.2 NC_004681.1 + 26991 0.71 0.695035
Target:  5'- uCGUUCAaggugUCUGgCAGCGGCUAcggauggcacACCGCc -3'
miRNA:   3'- cGCAAGU-----GGAUgGUCGUCGAU----------UGGCG- -5'
18397 3' -52.2 NC_004681.1 + 48904 0.71 0.706917
Target:  5'- cGCGggCACCgucccguacaagaccAuCCAGCAGC--GCCGCa -3'
miRNA:   3'- -CGCaaGUGGa--------------U-GGUCGUCGauUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.