miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 5' -56.6 NC_004681.1 + 49608 0.66 0.746803
Target:  5'- aAGGCGcagaUUC-CCGuCGUCGUCCGguGAACg -3'
miRNA:   3'- -UCCGC----AAGcGGCuGCGGUAGGU--CUUG- -5'
18397 5' -56.6 NC_004681.1 + 11372 0.66 0.746803
Target:  5'- uGGCGaccUgGCUGACGaaGUCCAcGAGCg -3'
miRNA:   3'- uCCGCa--AgCGGCUGCggUAGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 56340 0.66 0.733567
Target:  5'- aAGGUGUcgcccucuugcagcUCGCucggguCGACGCCgGUCCAGGc- -3'
miRNA:   3'- -UCCGCA--------------AGCG------GCUGCGG-UAGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 9020 0.66 0.726371
Target:  5'- cAGGcCGUUgaCGCCGGgguacccgcCGCCAgCCAGGAg -3'
miRNA:   3'- -UCC-GCAA--GCGGCU---------GCGGUaGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 50962 0.66 0.726371
Target:  5'- cGGCuacaccuaCGCCGACGCCAagcgUCaauGGAACa -3'
miRNA:   3'- uCCGcaa-----GCGGCUGCGGU----AGg--UCUUG- -5'
18397 5' -56.6 NC_004681.1 + 62416 0.66 0.726371
Target:  5'- uGGCuGggCGCCGAcaccgcccucucCGCCGcCCAGGAa -3'
miRNA:   3'- uCCG-CaaGCGGCU------------GCGGUaGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 24780 0.66 0.716017
Target:  5'- -cGCGcUCGCUGGCGCCA--CGGAAa -3'
miRNA:   3'- ucCGCaAGCGGCUGCGGUagGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 18493 0.66 0.716017
Target:  5'- aAGGCGUUUGCCGcCGCgG-CCGccGCc -3'
miRNA:   3'- -UCCGCAAGCGGCuGCGgUaGGUcuUG- -5'
18397 5' -56.6 NC_004681.1 + 23952 0.66 0.716017
Target:  5'- cGGCGUgcucaacacguUCGCCGACcugguagaCGUCCucaAGAACa -3'
miRNA:   3'- uCCGCA-----------AGCGGCUGcg------GUAGG---UCUUG- -5'
18397 5' -56.6 NC_004681.1 + 16905 0.66 0.705585
Target:  5'- cGGGUG-UCGCCaccgagGAUGaCAUCCAGAAg -3'
miRNA:   3'- -UCCGCaAGCGG------CUGCgGUAGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 32922 0.66 0.705585
Target:  5'- uGGCGUUgaugaGCCuGAucagcuccuucaCGCCGUCCuGGACg -3'
miRNA:   3'- uCCGCAAg----CGG-CU------------GCGGUAGGuCUUG- -5'
18397 5' -56.6 NC_004681.1 + 23267 0.66 0.705585
Target:  5'- uGGCGUggcgUCGUucaGACGCuCAUCCAGc-- -3'
miRNA:   3'- uCCGCA----AGCGg--CUGCG-GUAGGUCuug -5'
18397 5' -56.6 NC_004681.1 + 44788 0.66 0.705585
Target:  5'- -cGCGUgacgccgccgUCGCCGuuGCCGUCgAGGAg -3'
miRNA:   3'- ucCGCA----------AGCGGCugCGGUAGgUCUUg -5'
18397 5' -56.6 NC_004681.1 + 43020 0.66 0.695084
Target:  5'- -aGCGUUCGCaGcCGCCA-CCGGAGu -3'
miRNA:   3'- ucCGCAAGCGgCuGCGGUaGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 30449 0.66 0.695084
Target:  5'- gGGGCGcucUCGCCcacgaACGuCCA-CCAGGGCa -3'
miRNA:   3'- -UCCGCa--AGCGGc----UGC-GGUaGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 30798 0.66 0.695084
Target:  5'- uGGGaGUUCGCac-CGCCA-CCAGGGCc -3'
miRNA:   3'- -UCCgCAAGCGgcuGCGGUaGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 18296 0.67 0.684526
Target:  5'- cGGGgGUgCGCCGggagGCGC--UCCAGGACc -3'
miRNA:   3'- -UCCgCAaGCGGC----UGCGguAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 52071 0.67 0.673921
Target:  5'- gAGGCG-UCGUCGugGauuUCCAGGGg -3'
miRNA:   3'- -UCCGCaAGCGGCugCgguAGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 23325 0.67 0.670732
Target:  5'- gGGGgGUUgagcagauugaugcCGCCGAacaCGCCcUCCAGGAa -3'
miRNA:   3'- -UCCgCAA--------------GCGGCU---GCGGuAGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 32642 0.67 0.663279
Target:  5'- aGGGCG-UCGaaGAUGCCAgcggccaCCAGGAa -3'
miRNA:   3'- -UCCGCaAGCggCUGCGGUa------GGUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.