miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 5' -56.6 NC_004681.1 + 15372 1.1 0.000929
Target:  5'- aAGGCGUUCGCCGACGCCAUCCAGAACg -3'
miRNA:   3'- -UCCGCAAGCGGCUGCGGUAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 33312 0.81 0.09543
Target:  5'- cGGUGUaCGCCGGgacguuCGCCGUCCAGGGCa -3'
miRNA:   3'- uCCGCAaGCGGCU------GCGGUAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 57754 0.77 0.176398
Target:  5'- aAGGUGUUCGCCGAgcuucaggcgacacCGCCA-CCGGAGa -3'
miRNA:   3'- -UCCGCAAGCGGCU--------------GCGGUaGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 51827 0.76 0.224565
Target:  5'- gGGGCGgcCGCCGACGaCCA-CCAGGu- -3'
miRNA:   3'- -UCCGCaaGCGGCUGC-GGUaGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 26321 0.74 0.281372
Target:  5'- gGGGCGggcaucgcCGCCGugGCgGgCCAGGACg -3'
miRNA:   3'- -UCCGCaa------GCGGCugCGgUaGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 42382 0.73 0.325237
Target:  5'- gAGGCGUaCGUCGAaGCCAUCUAcGACg -3'
miRNA:   3'- -UCCGCAaGCGGCUgCGGUAGGUcUUG- -5'
18397 5' -56.6 NC_004681.1 + 15939 0.73 0.325237
Target:  5'- cAGGCcaUCGCUGGCGCCAUCUcguucauuGGggUg -3'
miRNA:   3'- -UCCGcaAGCGGCUGCGGUAGG--------UCuuG- -5'
18397 5' -56.6 NC_004681.1 + 34420 0.73 0.349005
Target:  5'- uGGCGcaggUCGCCauGAUGCCAUcCCAGAugACg -3'
miRNA:   3'- uCCGCa---AGCGG--CUGCGGUA-GGUCU--UG- -5'
18397 5' -56.6 NC_004681.1 + 582 0.72 0.360512
Target:  5'- cAGGCGaguuccuucagggCGCCaucGACGCCGUCgAGAACu -3'
miRNA:   3'- -UCCGCaa-----------GCGG---CUGCGGUAGgUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 14458 0.72 0.373985
Target:  5'- gAGGCGaaCGCCGcgcGCGCCGccUCCGccGAGCa -3'
miRNA:   3'- -UCCGCaaGCGGC---UGCGGU--AGGU--CUUG- -5'
18397 5' -56.6 NC_004681.1 + 14545 0.71 0.446257
Target:  5'- cGGCGUUCGCCucCGCC-UCgCGGGcgGCg -3'
miRNA:   3'- uCCGCAAGCGGcuGCGGuAG-GUCU--UG- -5'
18397 5' -56.6 NC_004681.1 + 15232 0.7 0.465513
Target:  5'- uGGGCGUcaugaagcagaUCaaCGACGCCAUCaagaAGGACa -3'
miRNA:   3'- -UCCGCA-----------AGcgGCUGCGGUAGg---UCUUG- -5'
18397 5' -56.6 NC_004681.1 + 21548 0.7 0.494176
Target:  5'- gGGGCGUaggcaUUGCCGggguugaggaacgGCGCCAgcaccuugcCCAGGACg -3'
miRNA:   3'- -UCCGCA-----AGCGGC-------------UGCGGUa--------GGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 51311 0.69 0.525673
Target:  5'- cGGUGagucCGCCGACGUCAUCaccgucgccgCGGAGCu -3'
miRNA:   3'- uCCGCaa--GCGGCUGCGGUAG----------GUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 24238 0.69 0.535998
Target:  5'- uGGCGg-CGuCCGACGCgAUCUugaGGAACa -3'
miRNA:   3'- uCCGCaaGC-GGCUGCGgUAGG---UCUUG- -5'
18397 5' -56.6 NC_004681.1 + 19373 0.69 0.546392
Target:  5'- aAGGCGUcgUUGuuGAcCGCgGUCCAGGu- -3'
miRNA:   3'- -UCCGCA--AGCggCU-GCGgUAGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 68884 0.69 0.546392
Target:  5'- uGGCcgcgGCCGACGCCAUCgAGGc- -3'
miRNA:   3'- uCCGcaagCGGCUGCGGUAGgUCUug -5'
18397 5' -56.6 NC_004681.1 + 39200 0.68 0.577928
Target:  5'- aAGGUGUUgcccgCGCagGugGCCA-CCAGGGCu -3'
miRNA:   3'- -UCCGCAA-----GCGg-CugCGGUaGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 27900 0.68 0.577928
Target:  5'- uGGCGc-CGCCG-CGCCcaucUCCAGAAg -3'
miRNA:   3'- uCCGCaaGCGGCuGCGGu---AGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 54387 0.68 0.577928
Target:  5'- uGGGUGUggaguucgaggUgGUCGACGUCAagcgcgacgUCCAGAGCu -3'
miRNA:   3'- -UCCGCA-----------AgCGGCUGCGGU---------AGGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.