miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 5' -56.6 NC_004681.1 + 75248 0.67 0.663279
Target:  5'- uAGGCGaua-CCGGCGCgGUCUAGGAa -3'
miRNA:   3'- -UCCGCaagcGGCUGCGgUAGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 68604 0.67 0.652609
Target:  5'- cAGGCGU--GCCGcgaGCCAUUCAGuGGCg -3'
miRNA:   3'- -UCCGCAagCGGCug-CGGUAGGUC-UUG- -5'
18397 5' -56.6 NC_004681.1 + 25087 0.67 0.652609
Target:  5'- ------cCGCCGACGCCugugccgCCAGAGCc -3'
miRNA:   3'- uccgcaaGCGGCUGCGGua-----GGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 15080 0.68 0.631225
Target:  5'- gGGuGCGUcUGCUGACcaGUCGUCgCAGAACa -3'
miRNA:   3'- -UC-CGCAaGCGGCUG--CGGUAG-GUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 24203 0.68 0.631225
Target:  5'- aAGGCGUcCGCC-AgGCUGgcgCCGGAACc -3'
miRNA:   3'- -UCCGCAaGCGGcUgCGGUa--GGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 66748 0.68 0.631225
Target:  5'- cGGGUaccccccgaUGCCcagaGCGCCGUCCAGAGCg -3'
miRNA:   3'- -UCCGcaa------GCGGc---UGCGGUAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 12296 0.68 0.61946
Target:  5'- cGGCGcgCGgggaagcCCGACGCCGggUCCGGGu- -3'
miRNA:   3'- uCCGCaaGC-------GGCUGCGGU--AGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 48228 0.68 0.609843
Target:  5'- uGGCccUCGCCGAgGCUcgCCAGucCg -3'
miRNA:   3'- uCCGcaAGCGGCUgCGGuaGGUCuuG- -5'
18397 5' -56.6 NC_004681.1 + 60063 0.68 0.609843
Target:  5'- cGGC---UGaCCGugGCCAUCgAGGACg -3'
miRNA:   3'- uCCGcaaGC-GGCugCGGUAGgUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 8288 0.68 0.609843
Target:  5'- cGGUGg-CGCgGACGCCG-CCAaGGACg -3'
miRNA:   3'- uCCGCaaGCGgCUGCGGUaGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 53703 0.68 0.609843
Target:  5'- uGGGUGUccaugaccgUCGCCGAccucguCGCCAUCCucaccGGAGu -3'
miRNA:   3'- -UCCGCA---------AGCGGCU------GCGGUAGG-----UCUUg -5'
18397 5' -56.6 NC_004681.1 + 16124 0.68 0.609843
Target:  5'- cGGCGg-CGCCcuUGCCAgcagCCGGGACg -3'
miRNA:   3'- uCCGCaaGCGGcuGCGGUa---GGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 40043 0.68 0.599176
Target:  5'- aGGGCGaagCcgaucccgcagGCCGACGCCAgcacCCAGAu- -3'
miRNA:   3'- -UCCGCaa-G-----------CGGCUGCGGUa---GGUCUug -5'
18397 5' -56.6 NC_004681.1 + 2816 0.68 0.588535
Target:  5'- gAGGCGacgaGuUCGGCGCCGUCCGcGAAUu -3'
miRNA:   3'- -UCCGCaag-C-GGCUGCGGUAGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 27900 0.68 0.577928
Target:  5'- uGGCGc-CGCCG-CGCCcaucUCCAGAAg -3'
miRNA:   3'- uCCGCaaGCGGCuGCGGu---AGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 39200 0.68 0.577928
Target:  5'- aAGGUGUUgcccgCGCagGugGCCA-CCAGGGCu -3'
miRNA:   3'- -UCCGCAA-----GCGg-CugCGGUaGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 54387 0.68 0.577928
Target:  5'- uGGGUGUggaguucgaggUgGUCGACGUCAagcgcgacgUCCAGAGCu -3'
miRNA:   3'- -UCCGCA-----------AgCGGCUGCGGU---------AGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 19373 0.69 0.546392
Target:  5'- aAGGCGUcgUUGuuGAcCGCgGUCCAGGu- -3'
miRNA:   3'- -UCCGCA--AGCggCU-GCGgUAGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 68884 0.69 0.546392
Target:  5'- uGGCcgcgGCCGACGCCAUCgAGGc- -3'
miRNA:   3'- uCCGcaagCGGCUGCGGUAGgUCUug -5'
18397 5' -56.6 NC_004681.1 + 24238 0.69 0.535998
Target:  5'- uGGCGg-CGuCCGACGCgAUCUugaGGAACa -3'
miRNA:   3'- uCCGCaaGC-GGCUGCGgUAGG---UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.