miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 5' -56.6 NC_004681.1 + 582 0.72 0.360512
Target:  5'- cAGGCGaguuccuucagggCGCCaucGACGCCGUCgAGAACu -3'
miRNA:   3'- -UCCGCaa-----------GCGG---CUGCGGUAGgUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 2816 0.68 0.588535
Target:  5'- gAGGCGacgaGuUCGGCGCCGUCCGcGAAUu -3'
miRNA:   3'- -UCCGCaag-C-GGCUGCGGUAGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 8288 0.68 0.609843
Target:  5'- cGGUGg-CGCgGACGCCG-CCAaGGACg -3'
miRNA:   3'- uCCGCaaGCGgCUGCGGUaGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 9020 0.66 0.726371
Target:  5'- cAGGcCGUUgaCGCCGGgguacccgcCGCCAgCCAGGAg -3'
miRNA:   3'- -UCC-GCAA--GCGGCU---------GCGGUaGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 11372 0.66 0.746803
Target:  5'- uGGCGaccUgGCUGACGaaGUCCAcGAGCg -3'
miRNA:   3'- uCCGCa--AgCGGCUGCggUAGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 12296 0.68 0.61946
Target:  5'- cGGCGcgCGgggaagcCCGACGCCGggUCCGGGu- -3'
miRNA:   3'- uCCGCaaGC-------GGCUGCGGU--AGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 14458 0.72 0.373985
Target:  5'- gAGGCGaaCGCCGcgcGCGCCGccUCCGccGAGCa -3'
miRNA:   3'- -UCCGCaaGCGGC---UGCGGU--AGGU--CUUG- -5'
18397 5' -56.6 NC_004681.1 + 14545 0.71 0.446257
Target:  5'- cGGCGUUCGCCucCGCC-UCgCGGGcgGCg -3'
miRNA:   3'- uCCGCAAGCGGcuGCGGuAG-GUCU--UG- -5'
18397 5' -56.6 NC_004681.1 + 15080 0.68 0.631225
Target:  5'- gGGuGCGUcUGCUGACcaGUCGUCgCAGAACa -3'
miRNA:   3'- -UC-CGCAaGCGGCUG--CGGUAG-GUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 15232 0.7 0.465513
Target:  5'- uGGGCGUcaugaagcagaUCaaCGACGCCAUCaagaAGGACa -3'
miRNA:   3'- -UCCGCA-----------AGcgGCUGCGGUAGg---UCUUG- -5'
18397 5' -56.6 NC_004681.1 + 15372 1.1 0.000929
Target:  5'- aAGGCGUUCGCCGACGCCAUCCAGAACg -3'
miRNA:   3'- -UCCGCAAGCGGCUGCGGUAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 15939 0.73 0.325237
Target:  5'- cAGGCcaUCGCUGGCGCCAUCUcguucauuGGggUg -3'
miRNA:   3'- -UCCGcaAGCGGCUGCGGUAGG--------UCuuG- -5'
18397 5' -56.6 NC_004681.1 + 16124 0.68 0.609843
Target:  5'- cGGCGg-CGCCcuUGCCAgcagCCGGGACg -3'
miRNA:   3'- uCCGCaaGCGGcuGCGGUa---GGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 16905 0.66 0.705585
Target:  5'- cGGGUG-UCGCCaccgagGAUGaCAUCCAGAAg -3'
miRNA:   3'- -UCCGCaAGCGG------CUGCgGUAGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 18296 0.67 0.684526
Target:  5'- cGGGgGUgCGCCGggagGCGC--UCCAGGACc -3'
miRNA:   3'- -UCCgCAaGCGGC----UGCGguAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 18493 0.66 0.716017
Target:  5'- aAGGCGUUUGCCGcCGCgG-CCGccGCc -3'
miRNA:   3'- -UCCGCAAGCGGCuGCGgUaGGUcuUG- -5'
18397 5' -56.6 NC_004681.1 + 19373 0.69 0.546392
Target:  5'- aAGGCGUcgUUGuuGAcCGCgGUCCAGGu- -3'
miRNA:   3'- -UCCGCA--AGCggCU-GCGgUAGGUCUug -5'
18397 5' -56.6 NC_004681.1 + 21548 0.7 0.494176
Target:  5'- gGGGCGUaggcaUUGCCGggguugaggaacgGCGCCAgcaccuugcCCAGGACg -3'
miRNA:   3'- -UCCGCA-----AGCGGC-------------UGCGGUa--------GGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 23267 0.66 0.705585
Target:  5'- uGGCGUggcgUCGUucaGACGCuCAUCCAGc-- -3'
miRNA:   3'- uCCGCA----AGCGg--CUGCG-GUAGGUCuug -5'
18397 5' -56.6 NC_004681.1 + 23325 0.67 0.670732
Target:  5'- gGGGgGUUgagcagauugaugcCGCCGAacaCGCCcUCCAGGAa -3'
miRNA:   3'- -UCCgCAA--------------GCGGCU---GCGGuAGGUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.