miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18397 5' -56.6 NC_004681.1 + 23267 0.66 0.705585
Target:  5'- uGGCGUggcgUCGUucaGACGCuCAUCCAGc-- -3'
miRNA:   3'- uCCGCA----AGCGg--CUGCG-GUAGGUCuug -5'
18397 5' -56.6 NC_004681.1 + 40043 0.68 0.599176
Target:  5'- aGGGCGaagCcgaucccgcagGCCGACGCCAgcacCCAGAu- -3'
miRNA:   3'- -UCCGCaa-G-----------CGGCUGCGGUa---GGUCUug -5'
18397 5' -56.6 NC_004681.1 + 48228 0.68 0.609843
Target:  5'- uGGCccUCGCCGAgGCUcgCCAGucCg -3'
miRNA:   3'- uCCGcaAGCGGCUgCGGuaGGUCuuG- -5'
18397 5' -56.6 NC_004681.1 + 60063 0.68 0.609843
Target:  5'- cGGC---UGaCCGugGCCAUCgAGGACg -3'
miRNA:   3'- uCCGcaaGC-GGCugCGGUAGgUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 8288 0.68 0.609843
Target:  5'- cGGUGg-CGCgGACGCCG-CCAaGGACg -3'
miRNA:   3'- uCCGCaaGCGgCUGCGGUaGGU-CUUG- -5'
18397 5' -56.6 NC_004681.1 + 53703 0.68 0.609843
Target:  5'- uGGGUGUccaugaccgUCGCCGAccucguCGCCAUCCucaccGGAGu -3'
miRNA:   3'- -UCCGCA---------AGCGGCU------GCGGUAGG-----UCUUg -5'
18397 5' -56.6 NC_004681.1 + 15080 0.68 0.631225
Target:  5'- gGGuGCGUcUGCUGACcaGUCGUCgCAGAACa -3'
miRNA:   3'- -UC-CGCAaGCGGCUG--CGGUAG-GUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 30449 0.66 0.695084
Target:  5'- gGGGCGcucUCGCCcacgaACGuCCA-CCAGGGCa -3'
miRNA:   3'- -UCCGCa--AGCGGc----UGC-GGUaGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 16905 0.66 0.705585
Target:  5'- cGGGUG-UCGCCaccgagGAUGaCAUCCAGAAg -3'
miRNA:   3'- -UCCGCaAGCGG------CUGCgGUAGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 54387 0.68 0.577928
Target:  5'- uGGGUGUggaguucgaggUgGUCGACGUCAagcgcgacgUCCAGAGCu -3'
miRNA:   3'- -UCCGCA-----------AgCGGCUGCGGU---------AGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 68884 0.69 0.546392
Target:  5'- uGGCcgcgGCCGACGCCAUCgAGGc- -3'
miRNA:   3'- uCCGcaagCGGCUGCGGUAGgUCUug -5'
18397 5' -56.6 NC_004681.1 + 51311 0.69 0.525673
Target:  5'- cGGUGagucCGCCGACGUCAUCaccgucgccgCGGAGCu -3'
miRNA:   3'- uCCGCaa--GCGGCUGCGGUAG----------GUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 33312 0.81 0.09543
Target:  5'- cGGUGUaCGCCGGgacguuCGCCGUCCAGGGCa -3'
miRNA:   3'- uCCGCAaGCGGCU------GCGGUAGGUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 57754 0.77 0.176398
Target:  5'- aAGGUGUUCGCCGAgcuucaggcgacacCGCCA-CCGGAGa -3'
miRNA:   3'- -UCCGCAAGCGGCU--------------GCGGUaGGUCUUg -5'
18397 5' -56.6 NC_004681.1 + 15939 0.73 0.325237
Target:  5'- cAGGCcaUCGCUGGCGCCAUCUcguucauuGGggUg -3'
miRNA:   3'- -UCCGcaAGCGGCUGCGGUAGG--------UCuuG- -5'
18397 5' -56.6 NC_004681.1 + 42382 0.73 0.325237
Target:  5'- gAGGCGUaCGUCGAaGCCAUCUAcGACg -3'
miRNA:   3'- -UCCGCAaGCGGCUgCGGUAGGUcUUG- -5'
18397 5' -56.6 NC_004681.1 + 34420 0.73 0.349005
Target:  5'- uGGCGcaggUCGCCauGAUGCCAUcCCAGAugACg -3'
miRNA:   3'- uCCGCa---AGCGG--CUGCGGUA-GGUCU--UG- -5'
18397 5' -56.6 NC_004681.1 + 582 0.72 0.360512
Target:  5'- cAGGCGaguuccuucagggCGCCaucGACGCCGUCgAGAACu -3'
miRNA:   3'- -UCCGCaa-----------GCGG---CUGCGGUAGgUCUUG- -5'
18397 5' -56.6 NC_004681.1 + 14458 0.72 0.373985
Target:  5'- gAGGCGaaCGCCGcgcGCGCCGccUCCGccGAGCa -3'
miRNA:   3'- -UCCGCaaGCGGC---UGCGGU--AGGU--CUUG- -5'
18397 5' -56.6 NC_004681.1 + 15232 0.7 0.465513
Target:  5'- uGGGCGUcaugaagcagaUCaaCGACGCCAUCaagaAGGACa -3'
miRNA:   3'- -UCCGCA-----------AGcgGCUGCGGUAGg---UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.