miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 3' -55.2 NC_004681.1 + 39956 0.66 0.777453
Target:  5'- aAGCGcuGCUCGAACuuGGCGCgCGCGGGc- -3'
miRNA:   3'- -UUGC--UGGGCUUGu-UCGUG-GCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 32003 0.66 0.757316
Target:  5'- --aGGCCCGcgauGGCGGcCGCCGCGAGg- -3'
miRNA:   3'- uugCUGGGC----UUGUUcGUGGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 10759 0.66 0.757316
Target:  5'- cGACGGCC---GCGGGCACCGgGGGc- -3'
miRNA:   3'- -UUGCUGGgcuUGUUCGUGGCgCUCau -5'
18398 3' -55.2 NC_004681.1 + 75531 0.66 0.757316
Target:  5'- aGGC-ACgUGGGCu-GCGCCGCGAGUAc -3'
miRNA:   3'- -UUGcUGgGCUUGuuCGUGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 65014 0.66 0.747053
Target:  5'- -uCGugCUccaGGCGGGCGCCGCGGGa- -3'
miRNA:   3'- uuGCugGGc--UUGUUCGUGGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 17580 0.66 0.747053
Target:  5'- uGACG-CCgCGGcCAAGCGCCGUG-GUAu -3'
miRNA:   3'- -UUGCuGG-GCUuGUUCGUGGCGCuCAU- -5'
18398 3' -55.2 NC_004681.1 + 67111 0.67 0.736676
Target:  5'- uACGGCCCGAAUGAGacCACCaCGGGc- -3'
miRNA:   3'- uUGCUGGGCUUGUUC--GUGGcGCUCau -5'
18398 3' -55.2 NC_004681.1 + 3208 0.67 0.715621
Target:  5'- cGCGAUCCGAuCAGGUAgucCUGCGGGa- -3'
miRNA:   3'- uUGCUGGGCUuGUUCGU---GGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 43978 0.67 0.715621
Target:  5'- aGGCGA-CCGAGCAGG-GCgGCGAGUc -3'
miRNA:   3'- -UUGCUgGGCUUGUUCgUGgCGCUCAu -5'
18398 3' -55.2 NC_004681.1 + 19691 0.67 0.704966
Target:  5'- cAGCGcGCCCaGAGCucGUugACCGCGGGUGc -3'
miRNA:   3'- -UUGC-UGGG-CUUGuuCG--UGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 3932 0.67 0.701756
Target:  5'- uAACGACaCCGAGgGcuucgcuggccugaAGCACCGgGAGa- -3'
miRNA:   3'- -UUGCUG-GGCUUgU--------------UCGUGGCgCUCau -5'
18398 3' -55.2 NC_004681.1 + 3136 0.68 0.672626
Target:  5'- --aGGCCCuu---GGCGCCGCGGGUGc -3'
miRNA:   3'- uugCUGGGcuuguUCGUGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 40134 0.68 0.661756
Target:  5'- uGACcGCCCgGGACAGGCagGCCGCGAc-- -3'
miRNA:   3'- -UUGcUGGG-CUUGUUCG--UGGCGCUcau -5'
18398 3' -55.2 NC_004681.1 + 22884 0.68 0.661756
Target:  5'- uAGCGGCCCacGACAGGCcCCGUG-GUGg -3'
miRNA:   3'- -UUGCUGGGc-UUGUUCGuGGCGCuCAU- -5'
18398 3' -55.2 NC_004681.1 + 71581 0.68 0.65086
Target:  5'- uAUGACCCGGGacaGGGCACCGUGu--- -3'
miRNA:   3'- uUGCUGGGCUUg--UUCGUGGCGCucau -5'
18398 3' -55.2 NC_004681.1 + 32982 0.69 0.606112
Target:  5'- --gGACCCgGGACAccaccucGGCGCCcuGCGAGUAc -3'
miRNA:   3'- uugCUGGG-CUUGU-------UCGUGG--CGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 65168 0.69 0.596316
Target:  5'- cGGCGAccaCCCGAGCGGGgAUCGUgGAGUAc -3'
miRNA:   3'- -UUGCU---GGGCUUGUUCgUGGCG-CUCAU- -5'
18398 3' -55.2 NC_004681.1 + 52476 0.69 0.596316
Target:  5'- -cCGACCCucGACAucGCGCCGCGGGc- -3'
miRNA:   3'- uuGCUGGGc-UUGUu-CGUGGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 3502 0.69 0.574645
Target:  5'- -gUGGCUCGcGCGGGCGCCGCGGc-- -3'
miRNA:   3'- uuGCUGGGCuUGUUCGUGGCGCUcau -5'
18398 3' -55.2 NC_004681.1 + 60473 0.7 0.542505
Target:  5'- cGACGaACCCGAGCuuGCGCaGCGGGa- -3'
miRNA:   3'- -UUGC-UGGGCUUGuuCGUGgCGCUCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.