miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 3' -55.2 NC_004681.1 + 1066 0.72 0.403131
Target:  5'- uACGGCCCGAugGagcccuGGCAgCGCGAGc- -3'
miRNA:   3'- uUGCUGGGCUugU------UCGUgGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 1414 0.71 0.490395
Target:  5'- gAugGGCCaCGAAUAcacggccauuGGCGCCGCGGGc- -3'
miRNA:   3'- -UugCUGG-GCUUGU----------UCGUGGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 3136 0.68 0.672626
Target:  5'- --aGGCCCuu---GGCGCCGCGGGUGc -3'
miRNA:   3'- uugCUGGGcuuguUCGUGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 3208 0.67 0.715621
Target:  5'- cGCGAUCCGAuCAGGUAgucCUGCGGGa- -3'
miRNA:   3'- uUGCUGGGCUuGUUCGU---GGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 3502 0.69 0.574645
Target:  5'- -gUGGCUCGcGCGGGCGCCGCGGc-- -3'
miRNA:   3'- uuGCUGGGCuUGUUCGUGGCGCUcau -5'
18398 3' -55.2 NC_004681.1 + 3932 0.67 0.701756
Target:  5'- uAACGACaCCGAGgGcuucgcuggccugaAGCACCGgGAGa- -3'
miRNA:   3'- -UUGCUG-GGCUUgU--------------UCGUGGCgCUCau -5'
18398 3' -55.2 NC_004681.1 + 6277 0.74 0.310842
Target:  5'- ----cCCCGAACGAGgGCCGCGAGa- -3'
miRNA:   3'- uugcuGGGCUUGUUCgUGGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 10759 0.66 0.757316
Target:  5'- cGACGGCC---GCGGGCACCGgGGGc- -3'
miRNA:   3'- -UUGCUGGgcuUGUUCGUGGCgCUCau -5'
18398 3' -55.2 NC_004681.1 + 16243 1.04 0.002856
Target:  5'- cAACGACCCGAACAAGCACCGCGAGUAc -3'
miRNA:   3'- -UUGCUGGGCUUGUUCGUGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 17580 0.66 0.747053
Target:  5'- uGACG-CCgCGGcCAAGCGCCGUG-GUAu -3'
miRNA:   3'- -UUGCuGG-GCUuGUUCGUGGCGCuCAU- -5'
18398 3' -55.2 NC_004681.1 + 18030 0.71 0.470201
Target:  5'- uACGGCUCGGGCAacgccucacggcAGCGCCGCGGu-- -3'
miRNA:   3'- uUGCUGGGCUUGU------------UCGUGGCGCUcau -5'
18398 3' -55.2 NC_004681.1 + 19691 0.67 0.704966
Target:  5'- cAGCGcGCCCaGAGCucGUugACCGCGGGUGc -3'
miRNA:   3'- -UUGC-UGGG-CUUGuuCG--UGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 20024 0.71 0.500642
Target:  5'- uGCGugUUGAGCAGGC-CCGCG-GUGg -3'
miRNA:   3'- uUGCugGGCUUGUUCGuGGCGCuCAU- -5'
18398 3' -55.2 NC_004681.1 + 22884 0.68 0.661756
Target:  5'- uAGCGGCCCacGACAGGCcCCGUG-GUGg -3'
miRNA:   3'- -UUGCUGGGc-UUGUUCGuGGCGCuCAU- -5'
18398 3' -55.2 NC_004681.1 + 27216 0.71 0.500642
Target:  5'- gGACGAgCCCGGAUGAGCuuGCCuccaccggguGCGAGUGg -3'
miRNA:   3'- -UUGCU-GGGCUUGUUCG--UGG----------CGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 28789 0.73 0.394053
Target:  5'- uGCGACCagcgCGAACAcgucAGCGCCcGCGGGUGc -3'
miRNA:   3'- uUGCUGG----GCUUGU----UCGUGG-CGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 29449 0.7 0.52141
Target:  5'- gGGCGACCuUGAACGAGuCGCUGuCGAGg- -3'
miRNA:   3'- -UUGCUGG-GCUUGUUC-GUGGC-GCUCau -5'
18398 3' -55.2 NC_004681.1 + 32002 0.71 0.460264
Target:  5'- -uCGGCUCGcuGAUcGGCGCCGCGGGUGu -3'
miRNA:   3'- uuGCUGGGC--UUGuUCGUGGCGCUCAU- -5'
18398 3' -55.2 NC_004681.1 + 32003 0.66 0.757316
Target:  5'- --aGGCCCGcgauGGCGGcCGCCGCGAGg- -3'
miRNA:   3'- uugCUGGGC----UUGUUcGUGGCGCUCau -5'
18398 3' -55.2 NC_004681.1 + 32982 0.69 0.606112
Target:  5'- --gGACCCgGGACAccaccucGGCGCCcuGCGAGUAc -3'
miRNA:   3'- uugCUGGG-CUUGU-------UCGUGG--CGCUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.