miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 5' -62.3 NC_004681.1 + 5898 0.66 0.441215
Target:  5'- uACCAGGU-UGGGGCgGCCAGCguucUUCCa -3'
miRNA:   3'- -UGGUCCGcGUCCCGaUGGUCGa---GGGG- -5'
18398 5' -62.3 NC_004681.1 + 1990 0.66 0.441215
Target:  5'- uCCGGGCGauuGGCU-CCAGCaCCCa -3'
miRNA:   3'- uGGUCCGCgucCCGAuGGUCGaGGGg -5'
18398 5' -62.3 NC_004681.1 + 18064 0.66 0.432098
Target:  5'- gGCCgcauGGGCuGCGGGGCccACCGGagccgCCCUc -3'
miRNA:   3'- -UGG----UCCG-CGUCCCGa-UGGUCga---GGGG- -5'
18398 5' -62.3 NC_004681.1 + 16681 0.66 0.423092
Target:  5'- gACCGGGgaCGCcgGGGGCUugUAGCgCUCg -3'
miRNA:   3'- -UGGUCC--GCG--UCCCGAugGUCGaGGGg -5'
18398 5' -62.3 NC_004681.1 + 42363 0.66 0.423092
Target:  5'- gGCCgugaAGGCGCcuuccgcGGGCgggACCAGCagCUCg -3'
miRNA:   3'- -UGG----UCCGCGu------CCCGa--UGGUCGagGGG- -5'
18398 5' -62.3 NC_004681.1 + 66631 0.66 0.423092
Target:  5'- gACCucGGC-CAGGGCUuCCuugagugacauGUUCCCCu -3'
miRNA:   3'- -UGGu-CCGcGUCCCGAuGGu----------CGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 12441 0.66 0.421305
Target:  5'- -gUAGGUGaAGGGCguguucggcgagACCGGCUCCUg -3'
miRNA:   3'- ugGUCCGCgUCCCGa-----------UGGUCGAGGGg -5'
18398 5' -62.3 NC_004681.1 + 3108 0.66 0.4142
Target:  5'- uGCCGcuGGCGUAGucguaggagagcGGgUACCGGCUgCCUCg -3'
miRNA:   3'- -UGGU--CCGCGUC------------CCgAUGGUCGA-GGGG- -5'
18398 5' -62.3 NC_004681.1 + 15998 0.66 0.40892
Target:  5'- gGCCAcGGCGaucuucacggugaccCAcGcGGCcGCCAgGCUCCCCa -3'
miRNA:   3'- -UGGU-CCGC---------------GU-C-CCGaUGGU-CGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 34188 0.66 0.405424
Target:  5'- -gCAGGaauuacuGgAGGGCgGCCAGCUUCUCa -3'
miRNA:   3'- ugGUCCg------CgUCCCGaUGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 51852 0.66 0.400215
Target:  5'- gACCGGcguuacucuugcccGCGcCGGGGCgGCCgccgacgaccaccaGGUUCCCCg -3'
miRNA:   3'- -UGGUC--------------CGC-GUCCCGaUGG--------------UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 45076 0.67 0.391628
Target:  5'- gGCCgAGGaugcaGCAGGGCUcauugggccugaGCCcgagcucgcgguggcGGCUCCaCCg -3'
miRNA:   3'- -UGG-UCCg----CGUCCCGA------------UGG---------------UCGAGG-GG- -5'
18398 5' -62.3 NC_004681.1 + 31396 0.67 0.388227
Target:  5'- uACgGGGCGCGcgacGGaCUGCCcgauggugcAGCUCCCUu -3'
miRNA:   3'- -UGgUCCGCGUc---CC-GAUGG---------UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 28835 0.67 0.388227
Target:  5'- -gCAGGCGCA-GGC-ACgGGCUCCa- -3'
miRNA:   3'- ugGUCCGCGUcCCGaUGgUCGAGGgg -5'
18398 5' -62.3 NC_004681.1 + 48123 0.67 0.379811
Target:  5'- cCCAGGCGgGGGGCUcaACCA--UCUgCa -3'
miRNA:   3'- uGGUCCGCgUCCCGA--UGGUcgAGGgG- -5'
18398 5' -62.3 NC_004681.1 + 24849 0.67 0.371517
Target:  5'- ---cGGCGC-GGGCggcgGCCgccaaGGCUCCCUc -3'
miRNA:   3'- ugguCCGCGuCCCGa---UGG-----UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 39244 0.67 0.370694
Target:  5'- cGCCgcggcaaGGGCGCcaAGGGCcGCCGcgucaaguaCUCCCCg -3'
miRNA:   3'- -UGG-------UCCGCG--UCCCGaUGGUc--------GAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 60113 0.68 0.339595
Target:  5'- cGCCuGGCuGUAcGGCaGCgGGUUCCCCa -3'
miRNA:   3'- -UGGuCCG-CGUcCCGaUGgUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 14293 0.68 0.339595
Target:  5'- cGCaAGGCGCAGGGUgagcuUCAGgUCgCCg -3'
miRNA:   3'- -UGgUCCGCGUCCCGau---GGUCgAGgGG- -5'
18398 5' -62.3 NC_004681.1 + 69213 0.68 0.339595
Target:  5'- gGCCAgGGCGCGGGcgaggcggcGCUucacACCAcacaCUCCCCc -3'
miRNA:   3'- -UGGU-CCGCGUCC---------CGA----UGGUc---GAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.