miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 5' -62.3 NC_004681.1 + 16277 1.11 0.000205
Target:  5'- gACCAGGCGCAGGGCUACCAGCUCCCCg -3'
miRNA:   3'- -UGGUCCGCGUCCCGAUGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 29775 0.76 0.091297
Target:  5'- uGCCAGGUGCAGccaGCUugCauGGCUUCCCa -3'
miRNA:   3'- -UGGUCCGCGUCc--CGAugG--UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 29807 0.75 0.098945
Target:  5'- cACCAGGCGCGGGaGCUcggcauccaACgCGGCgcgcuugCCCCu -3'
miRNA:   3'- -UGGUCCGCGUCC-CGA---------UG-GUCGa------GGGG- -5'
18398 5' -62.3 NC_004681.1 + 1370 0.72 0.161836
Target:  5'- cCUGGGCGCccuccgacaugucgGGGGCcACgAGUUCCCCa -3'
miRNA:   3'- uGGUCCGCG--------------UCCCGaUGgUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 2226 0.72 0.171694
Target:  5'- uGCCGGGUuaccacaucaGCGGGGgugGCCAGUaCCCCg -3'
miRNA:   3'- -UGGUCCG----------CGUCCCga-UGGUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 64772 0.71 0.190117
Target:  5'- uUCGGGCGguGGGCauuCCGGUcgucucgCCCCa -3'
miRNA:   3'- uGGUCCGCguCCCGau-GGUCGa------GGGG- -5'
18398 5' -62.3 NC_004681.1 + 22296 0.71 0.194987
Target:  5'- uGCCcgucauGGCGCAGGGUgagcCCGGUaagCCCCc -3'
miRNA:   3'- -UGGu-----CCGCGUCCCGau--GGUCGa--GGGG- -5'
18398 5' -62.3 NC_004681.1 + 11782 0.71 0.199966
Target:  5'- cGCCAGGCuGguGGaGCcauCCGGCUUCCa -3'
miRNA:   3'- -UGGUCCG-CguCC-CGau-GGUCGAGGGg -5'
18398 5' -62.3 NC_004681.1 + 4173 0.7 0.237986
Target:  5'- cCCA-GCGCGGGGUUggcgugggGCCAGCacUCCUCg -3'
miRNA:   3'- uGGUcCGCGUCCCGA--------UGGUCG--AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 27189 0.69 0.255433
Target:  5'- -aCAGGCGCGcgcuaccGGGCgaaguacACCGGCgucgcgCCCCu -3'
miRNA:   3'- ugGUCCGCGU-------CCCGa------UGGUCGa-----GGGG- -5'
18398 5' -62.3 NC_004681.1 + 17761 0.69 0.261688
Target:  5'- gGCCAGGaGCAGGGCgagaACCucauggaGGUUCCgCa -3'
miRNA:   3'- -UGGUCCgCGUCCCGa---UGG-------UCGAGGgG- -5'
18398 5' -62.3 NC_004681.1 + 12193 0.69 0.275228
Target:  5'- gACCcGGCGUcGGGCUuccccgcgcGCC-GCaUCCCCg -3'
miRNA:   3'- -UGGuCCGCGuCCCGA---------UGGuCG-AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 18123 0.69 0.275228
Target:  5'- gGCCAGGCaCcGGGUcaggucgGCCcGUUCCCCa -3'
miRNA:   3'- -UGGUCCGcGuCCCGa------UGGuCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 7686 0.69 0.275228
Target:  5'- -gCGGGCGUAGGuGCcaucaCGGCcUCCCCg -3'
miRNA:   3'- ugGUCCGCGUCC-CGaug--GUCG-AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 46934 0.69 0.275228
Target:  5'- uGCCGGGgcgguugcCGCGGGGCUGCgucucgUAGCgCUCCg -3'
miRNA:   3'- -UGGUCC--------GCGUCCCGAUG------GUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 60136 0.69 0.288639
Target:  5'- uGCCAGGUGCGGGaGCcGCCgaaGGCgagcaggugCCCa -3'
miRNA:   3'- -UGGUCCGCGUCC-CGaUGG---UCGa--------GGGg -5'
18398 5' -62.3 NC_004681.1 + 32846 0.69 0.288639
Target:  5'- gACCGGGCcgaacgagGCGGGGUaccacacaggcUGCCAGCggaagaggUCCUCa -3'
miRNA:   3'- -UGGUCCG--------CGUCCCG-----------AUGGUCG--------AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 16453 0.69 0.288639
Target:  5'- uCUcGGCGUGGuGGCguuCCAGCcCCCCa -3'
miRNA:   3'- uGGuCCGCGUC-CCGau-GGUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 27687 0.68 0.30185
Target:  5'- cCCAGGCGCcuguGGuGCcugccggUACCGGCUCgUCg -3'
miRNA:   3'- uGGUCCGCGu---CC-CG-------AUGGUCGAGgGG- -5'
18398 5' -62.3 NC_004681.1 + 1182 0.68 0.302558
Target:  5'- gGCCuugAGGCGCucGcGCUGCCAGggCUCCa -3'
miRNA:   3'- -UGG---UCCGCGucC-CGAUGGUCgaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.