Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 69213 | 0.68 | 0.339595 |
Target: 5'- gGCCAgGGCGCGGGcgaggcggcGCUucacACCAcacaCUCCCCc -3' miRNA: 3'- -UGGU-CCGCGUCC---------CGA----UGGUc---GAGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 9339 | 0.68 | 0.331932 |
Target: 5'- gUCAGGCGCAGGaGCUcCCAGUcgcgcggguUCaucaCCa -3' miRNA: 3'- uGGUCCGCGUCC-CGAuGGUCG---------AGg---GG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 55977 | 0.68 | 0.30971 |
Target: 5'- uGCC-GGUGCucGGCUGCCAGg-CCCUc -3' miRNA: 3'- -UGGuCCGCGucCCGAUGGUCgaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 1182 | 0.68 | 0.302558 |
Target: 5'- gGCCuugAGGCGCucGcGCUGCCAGggCUCCa -3' miRNA: 3'- -UGG---UCCGCGucC-CGAUGGUCgaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 27687 | 0.68 | 0.30185 |
Target: 5'- cCCAGGCGCcuguGGuGCcugccggUACCGGCUCgUCg -3' miRNA: 3'- uGGUCCGCGu---CC-CG-------AUGGUCGAGgGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 16453 | 0.69 | 0.288639 |
Target: 5'- uCUcGGCGUGGuGGCguuCCAGCcCCCCa -3' miRNA: 3'- uGGuCCGCGUC-CCGau-GGUCGaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 32846 | 0.69 | 0.288639 |
Target: 5'- gACCGGGCcgaacgagGCGGGGUaccacacaggcUGCCAGCggaagaggUCCUCa -3' miRNA: 3'- -UGGUCCG--------CGUCCCG-----------AUGGUCG--------AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 60136 | 0.69 | 0.288639 |
Target: 5'- uGCCAGGUGCGGGaGCcGCCgaaGGCgagcaggugCCCa -3' miRNA: 3'- -UGGUCCGCGUCC-CGaUGG---UCGa--------GGGg -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 18123 | 0.69 | 0.275228 |
Target: 5'- gGCCAGGCaCcGGGUcaggucgGCCcGUUCCCCa -3' miRNA: 3'- -UGGUCCGcGuCCCGa------UGGuCGAGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 7686 | 0.69 | 0.275228 |
Target: 5'- -gCGGGCGUAGGuGCcaucaCGGCcUCCCCg -3' miRNA: 3'- ugGUCCGCGUCC-CGaug--GUCG-AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 12193 | 0.69 | 0.275228 |
Target: 5'- gACCcGGCGUcGGGCUuccccgcgcGCC-GCaUCCCCg -3' miRNA: 3'- -UGGuCCGCGuCCCGA---------UGGuCG-AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 46934 | 0.69 | 0.275228 |
Target: 5'- uGCCGGGgcgguugcCGCGGGGCUGCgucucgUAGCgCUCCg -3' miRNA: 3'- -UGGUCC--------GCGUCCCGAUG------GUCGaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 17761 | 0.69 | 0.261688 |
Target: 5'- gGCCAGGaGCAGGGCgagaACCucauggaGGUUCCgCa -3' miRNA: 3'- -UGGUCCgCGUCCCGa---UGG-------UCGAGGgG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 27189 | 0.69 | 0.255433 |
Target: 5'- -aCAGGCGCGcgcuaccGGGCgaaguacACCGGCgucgcgCCCCu -3' miRNA: 3'- ugGUCCGCGU-------CCCGa------UGGUCGa-----GGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 4173 | 0.7 | 0.237986 |
Target: 5'- cCCA-GCGCGGGGUUggcgugggGCCAGCacUCCUCg -3' miRNA: 3'- uGGUcCGCGUCCCGA--------UGGUCG--AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 11782 | 0.71 | 0.199966 |
Target: 5'- cGCCAGGCuGguGGaGCcauCCGGCUUCCa -3' miRNA: 3'- -UGGUCCG-CguCC-CGau-GGUCGAGGGg -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 22296 | 0.71 | 0.194987 |
Target: 5'- uGCCcgucauGGCGCAGGGUgagcCCGGUaagCCCCc -3' miRNA: 3'- -UGGu-----CCGCGUCCCGau--GGUCGa--GGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 64772 | 0.71 | 0.190117 |
Target: 5'- uUCGGGCGguGGGCauuCCGGUcgucucgCCCCa -3' miRNA: 3'- uGGUCCGCguCCCGau-GGUCGa------GGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 2226 | 0.72 | 0.171694 |
Target: 5'- uGCCGGGUuaccacaucaGCGGGGgugGCCAGUaCCCCg -3' miRNA: 3'- -UGGUCCG----------CGUCCCga-UGGUCGaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 1370 | 0.72 | 0.161836 |
Target: 5'- cCUGGGCGCccuccgacaugucgGGGGCcACgAGUUCCCCa -3' miRNA: 3'- uGGUCCGCG--------------UCCCGaUGgUCGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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