Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 1182 | 0.68 | 0.302558 |
Target: 5'- gGCCuugAGGCGCucGcGCUGCCAGggCUCCa -3' miRNA: 3'- -UGG---UCCGCGucC-CGAUGGUCgaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 1370 | 0.72 | 0.161836 |
Target: 5'- cCUGGGCGCccuccgacaugucgGGGGCcACgAGUUCCCCa -3' miRNA: 3'- uGGUCCGCG--------------UCCCGaUGgUCGAGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 1990 | 0.66 | 0.441215 |
Target: 5'- uCCGGGCGauuGGCU-CCAGCaCCCa -3' miRNA: 3'- uGGUCCGCgucCCGAuGGUCGaGGGg -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 2226 | 0.72 | 0.171694 |
Target: 5'- uGCCGGGUuaccacaucaGCGGGGgugGCCAGUaCCCCg -3' miRNA: 3'- -UGGUCCG----------CGUCCCga-UGGUCGaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 3108 | 0.66 | 0.4142 |
Target: 5'- uGCCGcuGGCGUAGucguaggagagcGGgUACCGGCUgCCUCg -3' miRNA: 3'- -UGGU--CCGCGUC------------CCgAUGGUCGA-GGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 4173 | 0.7 | 0.237986 |
Target: 5'- cCCA-GCGCGGGGUUggcgugggGCCAGCacUCCUCg -3' miRNA: 3'- uGGUcCGCGUCCCGA--------UGGUCG--AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 5898 | 0.66 | 0.441215 |
Target: 5'- uACCAGGU-UGGGGCgGCCAGCguucUUCCa -3' miRNA: 3'- -UGGUCCGcGUCCCGaUGGUCGa---GGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 7686 | 0.69 | 0.275228 |
Target: 5'- -gCGGGCGUAGGuGCcaucaCGGCcUCCCCg -3' miRNA: 3'- ugGUCCGCGUCC-CGaug--GUCG-AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 9339 | 0.68 | 0.331932 |
Target: 5'- gUCAGGCGCAGGaGCUcCCAGUcgcgcggguUCaucaCCa -3' miRNA: 3'- uGGUCCGCGUCC-CGAuGGUCG---------AGg---GG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 11782 | 0.71 | 0.199966 |
Target: 5'- cGCCAGGCuGguGGaGCcauCCGGCUUCCa -3' miRNA: 3'- -UGGUCCG-CguCC-CGau-GGUCGAGGGg -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 12193 | 0.69 | 0.275228 |
Target: 5'- gACCcGGCGUcGGGCUuccccgcgcGCC-GCaUCCCCg -3' miRNA: 3'- -UGGuCCGCGuCCCGA---------UGGuCG-AGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 12441 | 0.66 | 0.421305 |
Target: 5'- -gUAGGUGaAGGGCguguucggcgagACCGGCUCCUg -3' miRNA: 3'- ugGUCCGCgUCCCGa-----------UGGUCGAGGGg -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 14293 | 0.68 | 0.339595 |
Target: 5'- cGCaAGGCGCAGGGUgagcuUCAGgUCgCCg -3' miRNA: 3'- -UGgUCCGCGUCCCGau---GGUCgAGgGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 15998 | 0.66 | 0.40892 |
Target: 5'- gGCCAcGGCGaucuucacggugaccCAcGcGGCcGCCAgGCUCCCCa -3' miRNA: 3'- -UGGU-CCGC---------------GU-C-CCGaUGGU-CGAGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 16277 | 1.11 | 0.000205 |
Target: 5'- gACCAGGCGCAGGGCUACCAGCUCCCCg -3' miRNA: 3'- -UGGUCCGCGUCCCGAUGGUCGAGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 16453 | 0.69 | 0.288639 |
Target: 5'- uCUcGGCGUGGuGGCguuCCAGCcCCCCa -3' miRNA: 3'- uGGuCCGCGUC-CCGau-GGUCGaGGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 16681 | 0.66 | 0.423092 |
Target: 5'- gACCGGGgaCGCcgGGGGCUugUAGCgCUCg -3' miRNA: 3'- -UGGUCC--GCG--UCCCGAugGUCGaGGGg -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 17761 | 0.69 | 0.261688 |
Target: 5'- gGCCAGGaGCAGGGCgagaACCucauggaGGUUCCgCa -3' miRNA: 3'- -UGGUCCgCGUCCCGa---UGG-------UCGAGGgG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 18064 | 0.66 | 0.432098 |
Target: 5'- gGCCgcauGGGCuGCGGGGCccACCGGagccgCCCUc -3' miRNA: 3'- -UGG----UCCG-CGUCCCGa-UGGUCga---GGGG- -5' |
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18398 | 5' | -62.3 | NC_004681.1 | + | 18123 | 0.69 | 0.275228 |
Target: 5'- gGCCAGGCaCcGGGUcaggucgGCCcGUUCCCCa -3' miRNA: 3'- -UGGUCCGcGuCCCGa------UGGuCGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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