miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 5' -62.3 NC_004681.1 + 22296 0.71 0.194987
Target:  5'- uGCCcgucauGGCGCAGGGUgagcCCGGUaagCCCCc -3'
miRNA:   3'- -UGGu-----CCGCGUCCCGau--GGUCGa--GGGG- -5'
18398 5' -62.3 NC_004681.1 + 24849 0.67 0.371517
Target:  5'- ---cGGCGC-GGGCggcgGCCgccaaGGCUCCCUc -3'
miRNA:   3'- ugguCCGCGuCCCGa---UGG-----UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 27189 0.69 0.255433
Target:  5'- -aCAGGCGCGcgcuaccGGGCgaaguacACCGGCgucgcgCCCCu -3'
miRNA:   3'- ugGUCCGCGU-------CCCGa------UGGUCGa-----GGGG- -5'
18398 5' -62.3 NC_004681.1 + 27687 0.68 0.30185
Target:  5'- cCCAGGCGCcuguGGuGCcugccggUACCGGCUCgUCg -3'
miRNA:   3'- uGGUCCGCGu---CC-CG-------AUGGUCGAGgGG- -5'
18398 5' -62.3 NC_004681.1 + 28835 0.67 0.388227
Target:  5'- -gCAGGCGCA-GGC-ACgGGCUCCa- -3'
miRNA:   3'- ugGUCCGCGUcCCGaUGgUCGAGGgg -5'
18398 5' -62.3 NC_004681.1 + 29775 0.76 0.091297
Target:  5'- uGCCAGGUGCAGccaGCUugCauGGCUUCCCa -3'
miRNA:   3'- -UGGUCCGCGUCc--CGAugG--UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 29807 0.75 0.098945
Target:  5'- cACCAGGCGCGGGaGCUcggcauccaACgCGGCgcgcuugCCCCu -3'
miRNA:   3'- -UGGUCCGCGUCC-CGA---------UG-GUCGa------GGGG- -5'
18398 5' -62.3 NC_004681.1 + 31396 0.67 0.388227
Target:  5'- uACgGGGCGCGcgacGGaCUGCCcgauggugcAGCUCCCUu -3'
miRNA:   3'- -UGgUCCGCGUc---CC-GAUGG---------UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 32846 0.69 0.288639
Target:  5'- gACCGGGCcgaacgagGCGGGGUaccacacaggcUGCCAGCggaagaggUCCUCa -3'
miRNA:   3'- -UGGUCCG--------CGUCCCG-----------AUGGUCG--------AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 32931 0.68 0.339595
Target:  5'- uGCCAGGCGUGGcGUUgaugagccugAUCAGCUCCUUc -3'
miRNA:   3'- -UGGUCCGCGUCcCGA----------UGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 34188 0.66 0.405424
Target:  5'- -gCAGGaauuacuGgAGGGCgGCCAGCUUCUCa -3'
miRNA:   3'- ugGUCCg------CgUCCCGaUGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 39244 0.67 0.370694
Target:  5'- cGCCgcggcaaGGGCGCcaAGGGCcGCCGcgucaaguaCUCCCCg -3'
miRNA:   3'- -UGG-------UCCGCG--UCCCGaUGGUc--------GAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 42363 0.66 0.423092
Target:  5'- gGCCgugaAGGCGCcuuccgcGGGCgggACCAGCagCUCg -3'
miRNA:   3'- -UGG----UCCGCGu------CCCGa--UGGUCGagGGG- -5'
18398 5' -62.3 NC_004681.1 + 45076 0.67 0.391628
Target:  5'- gGCCgAGGaugcaGCAGGGCUcauugggccugaGCCcgagcucgcgguggcGGCUCCaCCg -3'
miRNA:   3'- -UGG-UCCg----CGUCCCGA------------UGG---------------UCGAGG-GG- -5'
18398 5' -62.3 NC_004681.1 + 46934 0.69 0.275228
Target:  5'- uGCCGGGgcgguugcCGCGGGGCUGCgucucgUAGCgCUCCg -3'
miRNA:   3'- -UGGUCC--------GCGUCCCGAUG------GUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 48123 0.67 0.379811
Target:  5'- cCCAGGCGgGGGGCUcaACCA--UCUgCa -3'
miRNA:   3'- uGGUCCGCgUCCCGA--UGGUcgAGGgG- -5'
18398 5' -62.3 NC_004681.1 + 51852 0.66 0.400215
Target:  5'- gACCGGcguuacucuugcccGCGcCGGGGCgGCCgccgacgaccaccaGGUUCCCCg -3'
miRNA:   3'- -UGGUC--------------CGC-GUCCCGaUGG--------------UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 55977 0.68 0.30971
Target:  5'- uGCC-GGUGCucGGCUGCCAGg-CCCUc -3'
miRNA:   3'- -UGGuCCGCGucCCGAUGGUCgaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 60113 0.68 0.339595
Target:  5'- cGCCuGGCuGUAcGGCaGCgGGUUCCCCa -3'
miRNA:   3'- -UGGuCCG-CGUcCCGaUGgUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 60136 0.69 0.288639
Target:  5'- uGCCAGGUGCGGGaGCcGCCgaaGGCgagcaggugCCCa -3'
miRNA:   3'- -UGGUCCGCGUCC-CGaUGG---UCGa--------GGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.