Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 69213 | 0.68 | 0.339595 |
Target: 5'- gGCCAgGGCGCGGGcgaggcggcGCUucacACCAcacaCUCCCCc -3' miRNA: 3'- -UGGU-CCGCGUCC---------CGA----UGGUc---GAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 66631 | 0.66 | 0.423092 |
Target: 5'- gACCucGGC-CAGGGCUuCCuugagugacauGUUCCCCu -3' miRNA: 3'- -UGGu-CCGcGUCCCGAuGGu----------CGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 64772 | 0.71 | 0.190117 |
Target: 5'- uUCGGGCGguGGGCauuCCGGUcgucucgCCCCa -3' miRNA: 3'- uGGUCCGCguCCCGau-GGUCGa------GGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 60136 | 0.69 | 0.288639 |
Target: 5'- uGCCAGGUGCGGGaGCcGCCgaaGGCgagcaggugCCCa -3' miRNA: 3'- -UGGUCCGCGUCC-CGaUGG---UCGa--------GGGg -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 60113 | 0.68 | 0.339595 |
Target: 5'- cGCCuGGCuGUAcGGCaGCgGGUUCCCCa -3' miRNA: 3'- -UGGuCCG-CGUcCCGaUGgUCGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 55977 | 0.68 | 0.30971 |
Target: 5'- uGCC-GGUGCucGGCUGCCAGg-CCCUc -3' miRNA: 3'- -UGGuCCGCGucCCGAUGGUCgaGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 51852 | 0.66 | 0.400215 |
Target: 5'- gACCGGcguuacucuugcccGCGcCGGGGCgGCCgccgacgaccaccaGGUUCCCCg -3' miRNA: 3'- -UGGUC--------------CGC-GUCCCGaUGG--------------UCGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 48123 | 0.67 | 0.379811 |
Target: 5'- cCCAGGCGgGGGGCUcaACCA--UCUgCa -3' miRNA: 3'- uGGUCCGCgUCCCGA--UGGUcgAGGgG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 46934 | 0.69 | 0.275228 |
Target: 5'- uGCCGGGgcgguugcCGCGGGGCUGCgucucgUAGCgCUCCg -3' miRNA: 3'- -UGGUCC--------GCGUCCCGAUG------GUCGaGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 45076 | 0.67 | 0.391628 |
Target: 5'- gGCCgAGGaugcaGCAGGGCUcauugggccugaGCCcgagcucgcgguggcGGCUCCaCCg -3' miRNA: 3'- -UGG-UCCg----CGUCCCGA------------UGG---------------UCGAGG-GG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 42363 | 0.66 | 0.423092 |
Target: 5'- gGCCgugaAGGCGCcuuccgcGGGCgggACCAGCagCUCg -3' miRNA: 3'- -UGG----UCCGCGu------CCCGa--UGGUCGagGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 39244 | 0.67 | 0.370694 |
Target: 5'- cGCCgcggcaaGGGCGCcaAGGGCcGCCGcgucaaguaCUCCCCg -3' miRNA: 3'- -UGG-------UCCGCG--UCCCGaUGGUc--------GAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 34188 | 0.66 | 0.405424 |
Target: 5'- -gCAGGaauuacuGgAGGGCgGCCAGCUUCUCa -3' miRNA: 3'- ugGUCCg------CgUCCCGaUGGUCGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 32931 | 0.68 | 0.339595 |
Target: 5'- uGCCAGGCGUGGcGUUgaugagccugAUCAGCUCCUUc -3' miRNA: 3'- -UGGUCCGCGUCcCGA----------UGGUCGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 32846 | 0.69 | 0.288639 |
Target: 5'- gACCGGGCcgaacgagGCGGGGUaccacacaggcUGCCAGCggaagaggUCCUCa -3' miRNA: 3'- -UGGUCCG--------CGUCCCG-----------AUGGUCG--------AGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 31396 | 0.67 | 0.388227 |
Target: 5'- uACgGGGCGCGcgacGGaCUGCCcgauggugcAGCUCCCUu -3' miRNA: 3'- -UGgUCCGCGUc---CC-GAUGG---------UCGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 29807 | 0.75 | 0.098945 |
Target: 5'- cACCAGGCGCGGGaGCUcggcauccaACgCGGCgcgcuugCCCCu -3' miRNA: 3'- -UGGUCCGCGUCC-CGA---------UG-GUCGa------GGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 29775 | 0.76 | 0.091297 |
Target: 5'- uGCCAGGUGCAGccaGCUugCauGGCUUCCCa -3' miRNA: 3'- -UGGUCCGCGUCc--CGAugG--UCGAGGGG- -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 28835 | 0.67 | 0.388227 |
Target: 5'- -gCAGGCGCA-GGC-ACgGGCUCCa- -3' miRNA: 3'- ugGUCCGCGUcCCGaUGgUCGAGGgg -5' |
|||||||
18398 | 5' | -62.3 | NC_004681.1 | + | 27687 | 0.68 | 0.30185 |
Target: 5'- cCCAGGCGCcuguGGuGCcugccggUACCGGCUCgUCg -3' miRNA: 3'- uGGUCCGCGu---CC-CG-------AUGGUCGAGgGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home