miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 5' -62.3 NC_004681.1 + 16277 1.11 0.000205
Target:  5'- gACCAGGCGCAGGGCUACCAGCUCCCCg -3'
miRNA:   3'- -UGGUCCGCGUCCCGAUGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 1990 0.66 0.441215
Target:  5'- uCCGGGCGauuGGCU-CCAGCaCCCa -3'
miRNA:   3'- uGGUCCGCgucCCGAuGGUCGaGGGg -5'
18398 5' -62.3 NC_004681.1 + 28835 0.67 0.388227
Target:  5'- -gCAGGCGCA-GGC-ACgGGCUCCa- -3'
miRNA:   3'- ugGUCCGCGUcCCGaUGgUCGAGGgg -5'
18398 5' -62.3 NC_004681.1 + 31396 0.67 0.388227
Target:  5'- uACgGGGCGCGcgacGGaCUGCCcgauggugcAGCUCCCUu -3'
miRNA:   3'- -UGgUCCGCGUc---CC-GAUGG---------UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 24849 0.67 0.371517
Target:  5'- ---cGGCGC-GGGCggcgGCCgccaaGGCUCCCUc -3'
miRNA:   3'- ugguCCGCGuCCCGa---UGG-----UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 39244 0.67 0.370694
Target:  5'- cGCCgcggcaaGGGCGCcaAGGGCcGCCGcgucaaguaCUCCCCg -3'
miRNA:   3'- -UGG-------UCCGCG--UCCCGaUGGUc--------GAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 60113 0.68 0.339595
Target:  5'- cGCCuGGCuGUAcGGCaGCgGGUUCCCCa -3'
miRNA:   3'- -UGGuCCG-CGUcCCGaUGgUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 14293 0.68 0.339595
Target:  5'- cGCaAGGCGCAGGGUgagcuUCAGgUCgCCg -3'
miRNA:   3'- -UGgUCCGCGUCCCGau---GGUCgAGgGG- -5'
18398 5' -62.3 NC_004681.1 + 55977 0.68 0.30971
Target:  5'- uGCC-GGUGCucGGCUGCCAGg-CCCUc -3'
miRNA:   3'- -UGGuCCGCGucCCGAUGGUCgaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 16453 0.69 0.288639
Target:  5'- uCUcGGCGUGGuGGCguuCCAGCcCCCCa -3'
miRNA:   3'- uGGuCCGCGUC-CCGau-GGUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 12193 0.69 0.275228
Target:  5'- gACCcGGCGUcGGGCUuccccgcgcGCC-GCaUCCCCg -3'
miRNA:   3'- -UGGuCCGCGuCCCGA---------UGGuCG-AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 29775 0.76 0.091297
Target:  5'- uGCCAGGUGCAGccaGCUugCauGGCUUCCCa -3'
miRNA:   3'- -UGGUCCGCGUCc--CGAugG--UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 29807 0.75 0.098945
Target:  5'- cACCAGGCGCGGGaGCUcggcauccaACgCGGCgcgcuugCCCCu -3'
miRNA:   3'- -UGGUCCGCGUCC-CGA---------UG-GUCGa------GGGG- -5'
18398 5' -62.3 NC_004681.1 + 64772 0.71 0.190117
Target:  5'- uUCGGGCGguGGGCauuCCGGUcgucucgCCCCa -3'
miRNA:   3'- uGGUCCGCguCCCGau-GGUCGa------GGGG- -5'
18398 5' -62.3 NC_004681.1 + 22296 0.71 0.194987
Target:  5'- uGCCcgucauGGCGCAGGGUgagcCCGGUaagCCCCc -3'
miRNA:   3'- -UGGu-----CCGCGUCCCGau--GGUCGa--GGGG- -5'
18398 5' -62.3 NC_004681.1 + 27189 0.69 0.255433
Target:  5'- -aCAGGCGCGcgcuaccGGGCgaaguacACCGGCgucgcgCCCCu -3'
miRNA:   3'- ugGUCCGCGU-------CCCGa------UGGUCGa-----GGGG- -5'
18398 5' -62.3 NC_004681.1 + 17761 0.69 0.261688
Target:  5'- gGCCAGGaGCAGGGCgagaACCucauggaGGUUCCgCa -3'
miRNA:   3'- -UGGUCCgCGUCCCGa---UGG-------UCGAGGgG- -5'
18398 5' -62.3 NC_004681.1 + 18123 0.69 0.275228
Target:  5'- gGCCAGGCaCcGGGUcaggucgGCCcGUUCCCCa -3'
miRNA:   3'- -UGGUCCGcGuCCCGa------UGGuCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 5898 0.66 0.441215
Target:  5'- uACCAGGU-UGGGGCgGCCAGCguucUUCCa -3'
miRNA:   3'- -UGGUCCGcGUCCCGaUGGUCGa---GGGG- -5'
18398 5' -62.3 NC_004681.1 + 2226 0.72 0.171694
Target:  5'- uGCCGGGUuaccacaucaGCGGGGgugGCCAGUaCCCCg -3'
miRNA:   3'- -UGGUCCG----------CGUCCCga-UGGUCGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.