miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18398 5' -62.3 NC_004681.1 + 4173 0.7 0.237986
Target:  5'- cCCA-GCGCGGGGUUggcgugggGCCAGCacUCCUCg -3'
miRNA:   3'- uGGUcCGCGUCCCGA--------UGGUCG--AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 15998 0.66 0.40892
Target:  5'- gGCCAcGGCGaucuucacggugaccCAcGcGGCcGCCAgGCUCCCCa -3'
miRNA:   3'- -UGGU-CCGC---------------GU-C-CCGaUGGU-CGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 12441 0.66 0.421305
Target:  5'- -gUAGGUGaAGGGCguguucggcgagACCGGCUCCUg -3'
miRNA:   3'- ugGUCCGCgUCCCGa-----------UGGUCGAGGGg -5'
18398 5' -62.3 NC_004681.1 + 5898 0.66 0.441215
Target:  5'- uACCAGGU-UGGGGCgGCCAGCguucUUCCa -3'
miRNA:   3'- -UGGUCCGcGUCCCGaUGGUCGa---GGGG- -5'
18398 5' -62.3 NC_004681.1 + 32846 0.69 0.288639
Target:  5'- gACCGGGCcgaacgagGCGGGGUaccacacaggcUGCCAGCggaagaggUCCUCa -3'
miRNA:   3'- -UGGUCCG--------CGUCCCG-----------AUGGUCG--------AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 27687 0.68 0.30185
Target:  5'- cCCAGGCGCcuguGGuGCcugccggUACCGGCUCgUCg -3'
miRNA:   3'- uGGUCCGCGu---CC-CG-------AUGGUCGAGgGG- -5'
18398 5' -62.3 NC_004681.1 + 9339 0.68 0.331932
Target:  5'- gUCAGGCGCAGGaGCUcCCAGUcgcgcggguUCaucaCCa -3'
miRNA:   3'- uGGUCCGCGUCC-CGAuGGUCG---------AGg---GG- -5'
18398 5' -62.3 NC_004681.1 + 1370 0.72 0.161836
Target:  5'- cCUGGGCGCccuccgacaugucgGGGGCcACgAGUUCCCCa -3'
miRNA:   3'- uGGUCCGCG--------------UCCCGaUGgUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 2226 0.72 0.171694
Target:  5'- uGCCGGGUuaccacaucaGCGGGGgugGCCAGUaCCCCg -3'
miRNA:   3'- -UGGUCCG----------CGUCCCga-UGGUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 34188 0.66 0.405424
Target:  5'- -gCAGGaauuacuGgAGGGCgGCCAGCUUCUCa -3'
miRNA:   3'- ugGUCCg------CgUCCCGaUGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 48123 0.67 0.379811
Target:  5'- cCCAGGCGgGGGGCUcaACCA--UCUgCa -3'
miRNA:   3'- uGGUCCGCgUCCCGA--UGGUcgAGGgG- -5'
18398 5' -62.3 NC_004681.1 + 69213 0.68 0.339595
Target:  5'- gGCCAgGGCGCGGGcgaggcggcGCUucacACCAcacaCUCCCCc -3'
miRNA:   3'- -UGGU-CCGCGUCC---------CGA----UGGUc---GAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 46934 0.69 0.275228
Target:  5'- uGCCGGGgcgguugcCGCGGGGCUGCgucucgUAGCgCUCCg -3'
miRNA:   3'- -UGGUCC--------GCGUCCCGAUG------GUCGaGGGG- -5'
18398 5' -62.3 NC_004681.1 + 45076 0.67 0.391628
Target:  5'- gGCCgAGGaugcaGCAGGGCUcauugggccugaGCCcgagcucgcgguggcGGCUCCaCCg -3'
miRNA:   3'- -UGG-UCCg----CGUCCCGA------------UGG---------------UCGAGG-GG- -5'
18398 5' -62.3 NC_004681.1 + 7686 0.69 0.275228
Target:  5'- -gCGGGCGUAGGuGCcaucaCGGCcUCCCCg -3'
miRNA:   3'- ugGUCCGCGUCC-CGaug--GUCG-AGGGG- -5'
18398 5' -62.3 NC_004681.1 + 32931 0.68 0.339595
Target:  5'- uGCCAGGCGUGGcGUUgaugagccugAUCAGCUCCUUc -3'
miRNA:   3'- -UGGUCCGCGUCcCGA----------UGGUCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 51852 0.66 0.400215
Target:  5'- gACCGGcguuacucuugcccGCGcCGGGGCgGCCgccgacgaccaccaGGUUCCCCg -3'
miRNA:   3'- -UGGUC--------------CGC-GUCCCGaUGG--------------UCGAGGGG- -5'
18398 5' -62.3 NC_004681.1 + 3108 0.66 0.4142
Target:  5'- uGCCGcuGGCGUAGucguaggagagcGGgUACCGGCUgCCUCg -3'
miRNA:   3'- -UGGU--CCGCGUC------------CCgAUGGUCGA-GGGG- -5'
18398 5' -62.3 NC_004681.1 + 60136 0.69 0.288639
Target:  5'- uGCCAGGUGCGGGaGCcGCCgaaGGCgagcaggugCCCa -3'
miRNA:   3'- -UGGUCCGCGUCC-CGaUGG---UCGa--------GGGg -5'
18398 5' -62.3 NC_004681.1 + 1182 0.68 0.302558
Target:  5'- gGCCuugAGGCGCucGcGCUGCCAGggCUCCa -3'
miRNA:   3'- -UGG---UCCGCGucC-CGAUGGUCgaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.