Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
184 | 3' | -57.6 | AC_000007.1 | + | 23928 | 0.67 | 0.350941 |
Target: 5'- uGGgGGCGc--GCGGGgaGGCGGCGGCAc -3' miRNA: 3'- gUCgCCGUucuCGUUC--UCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 24194 | 0.66 | 0.415612 |
Target: 5'- uGGCGGCAucGGuGgAGGcGGUGGUGGCGa -3' miRNA: 3'- gUCGCCGU--UCuCgUUC-UCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 24649 | 0.66 | 0.425431 |
Target: 5'- gAGCGGaCAAGcAGCu--GGCcuuGCGGCAg -3' miRNA: 3'- gUCGCC-GUUC-UCGuucUCGu--CGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 26230 | 0.69 | 0.264461 |
Target: 5'- -cGCGGCugcugauAGGGCu---GCGGCGGCGg -3' miRNA: 3'- guCGCCGu------UCUCGuucuCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 26745 | 0.78 | 0.057507 |
Target: 5'- gCAGCGGCAgcGGcAGCAAcAGCAGCGGUc -3' miRNA: 3'- -GUCGCCGU--UC-UCGUUcUCGUCGCCGu -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 26832 | 0.69 | 0.264461 |
Target: 5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3' miRNA: 3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 27488 | 0.69 | 0.246726 |
Target: 5'- aCAGUGGUggGAGCgggAcuuuccugguacaccAGGGCAGCGGg- -3' miRNA: 3'- -GUCGCCGuuCUCG---U---------------UCUCGUCGCCgu -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 34263 | 0.68 | 0.309311 |
Target: 5'- -uGCGGUgguGGAuGUuaucAGGGCAGCGGCGc -3' miRNA: 3'- guCGCCGu--UCU-CGu---UCUCGUCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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