Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
184 | 3' | -57.6 | AC_000007.1 | + | 11067 | 1.08 | 0.000284 |
Target: 5'- gCAGCGGCAAGAGCAAGAGCAGCGGCAg -3' miRNA: 3'- -GUCGCCGUUCUCGUUCUCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 24649 | 0.66 | 0.425431 |
Target: 5'- gAGCGGaCAAGcAGCu--GGCcuuGCGGCAg -3' miRNA: 3'- gUCGCC-GUUC-UCGuucUCGu--CGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 8601 | 0.66 | 0.425431 |
Target: 5'- gGGgGGCucgggacccgccGGGAGaGGGGGCAGgGGCAc -3' miRNA: 3'- gUCgCCG------------UUCUCgUUCUCGUCgCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 15076 | 0.66 | 0.404973 |
Target: 5'- gCAGCGGCGcGGAagagaacuccaacGCGGcAGCcGCGGCAa -3' miRNA: 3'- -GUCGCCGU-UCU-------------CGUUcUCGuCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 4597 | 0.66 | 0.396398 |
Target: 5'- --aUGGCAAuGGGCccacGGGCGGCGGCc -3' miRNA: 3'- gucGCCGUU-CUCGuu--CUCGUCGCCGu -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 14187 | 0.66 | 0.396398 |
Target: 5'- -cGUGGUGAGcgcGGCGccAGuGGCGGCGGCGc -3' miRNA: 3'- guCGCCGUUC---UCGU--UC-UCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 18056 | 0.67 | 0.368672 |
Target: 5'- --uCGGCAccAGCAAuauGAGCGGUGGCGc -3' miRNA: 3'- gucGCCGUucUCGUU---CUCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 23928 | 0.67 | 0.350941 |
Target: 5'- uGGgGGCGc--GCGGGgaGGCGGCGGCAc -3' miRNA: 3'- gUCgCCGUucuCGUUC--UCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 8652 | 0.68 | 0.325498 |
Target: 5'- -cGCgGGCAGGAGCuGGuGCuGCGcGCGg -3' miRNA: 3'- guCG-CCGUUCUCGuUCuCGuCGC-CGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 26832 | 0.69 | 0.264461 |
Target: 5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3' miRNA: 3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 26745 | 0.78 | 0.057507 |
Target: 5'- gCAGCGGCAgcGGcAGCAAcAGCAGCGGUc -3' miRNA: 3'- -GUCGCCGU--UC-UCGUUcUCGUCGCCGu -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 2179 | 0.75 | 0.097533 |
Target: 5'- gCGGCGGCAGGAGC-AGAGCccauggaacccgagAGcCGGCc -3' miRNA: 3'- -GUCGCCGUUCUCGuUCUCG--------------UC-GCCGu -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 15041 | 0.73 | 0.143676 |
Target: 5'- gGGCGGgGAuGGCGcaGGCGGCGGCAa -3' miRNA: 3'- gUCGCCgUUcUCGUucUCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 9389 | 0.71 | 0.185454 |
Target: 5'- uGGCGGCGguGGGGgAGGGGggacaCGGCGGCGa -3' miRNA: 3'- gUCGCCGU--UCUCgUUCUC-----GUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 15186 | 0.7 | 0.23124 |
Target: 5'- aAGCGcGCuGAGGcCGAG-GCAGCGGCAg -3' miRNA: 3'- gUCGC-CG-UUCUcGUUCuCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 12064 | 0.69 | 0.250729 |
Target: 5'- gGGCccuGGCu--GGCAcGGGCAGCGGCGa -3' miRNA: 3'- gUCG---CCGuucUCGUuCUCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 9728 | 0.69 | 0.25752 |
Target: 5'- -cGUGGCGGGcGGCAGcGGGUGGCGGUc -3' miRNA: 3'- guCGCCGUUC-UCGUU-CUCGUCGCCGu -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 17573 | 0.74 | 0.110668 |
Target: 5'- gGGCuGGCGAcGGCGAcGGCGGCGGCGg -3' miRNA: 3'- gUCG-CCGUUcUCGUUcUCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 24194 | 0.66 | 0.415612 |
Target: 5'- uGGCGGCAucGGuGgAGGcGGUGGUGGCGa -3' miRNA: 3'- gUCGCCGU--UCuCgUUC-UCGUCGCCGU- -5' |
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184 | 3' | -57.6 | AC_000007.1 | + | 22102 | 0.67 | 0.35973 |
Target: 5'- aCAGCGGUcGGGGgAAGAaGCAaUGGCGc -3' miRNA: 3'- -GUCGCCGuUCUCgUUCU-CGUcGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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