miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 40068 0.66 0.630376
Target:  5'- cCGGUGaGUugacccGGCGCCgaCGCGCgCGGAu -3'
miRNA:   3'- -GCCGC-CGu-----UUGCGGaaGCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 52540 0.66 0.630376
Target:  5'- gGGCGaGCAAGCguuccucaaucGCCUcgCGCACCUuGGc -3'
miRNA:   3'- gCCGC-CGUUUG-----------CGGAa-GCGUGGG-CCu -5'
18400 3' -59.2 NC_004681.1 + 19249 0.66 0.630376
Target:  5'- -cGCaGCAAGCGCCaggUCuuCACCUGGAc -3'
miRNA:   3'- gcCGcCGUUUGCGGa--AGc-GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 21956 0.66 0.630376
Target:  5'- uGGCGGCcuGGCGuCCUUUGCgauGCUCGa- -3'
miRNA:   3'- gCCGCCGu-UUGC-GGAAGCG---UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 19558 0.66 0.630376
Target:  5'- -aGCGGCAuccAGCGCUUcccguucccCGCACCCGcGGu -3'
miRNA:   3'- gcCGCCGU---UUGCGGAa--------GCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 46881 0.66 0.630376
Target:  5'- aCGGCGcGCGggaugaccguGACGCCgugCGCGCgcagcgCCGGu -3'
miRNA:   3'- -GCCGC-CGU----------UUGCGGaa-GCGUG------GGCCu -5'
18400 3' -59.2 NC_004681.1 + 59588 0.66 0.629331
Target:  5'- gGGUGGgGggUuCCUuggaggaUUGCACCCGGGc -3'
miRNA:   3'- gCCGCCgUuuGcGGA-------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 25213 0.66 0.627241
Target:  5'- aCGGCGGCGAccgcuucuucaacaACggcgGCCaUgGCGCCCGcGGc -3'
miRNA:   3'- -GCCGCCGUU--------------UG----CGGaAgCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 9160 0.66 0.619925
Target:  5'- -cGCGGaGAACGUCUUCGaCGCCUucguGGAc -3'
miRNA:   3'- gcCGCCgUUUGCGGAAGC-GUGGG----CCU- -5'
18400 3' -59.2 NC_004681.1 + 53659 0.66 0.619925
Target:  5'- cCGGUGGC-GACGUUcUUGCACUCGa- -3'
miRNA:   3'- -GCCGCCGuUUGCGGaAGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 33414 0.66 0.619925
Target:  5'- uGGaCGGCGAACGUCccggCGUACaCCGcGGc -3'
miRNA:   3'- gCC-GCCGUUUGCGGaa--GCGUG-GGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 7433 0.66 0.619925
Target:  5'- gCGGCGGCGGG-GUCa--GC-CCCGGGu -3'
miRNA:   3'- -GCCGCCGUUUgCGGaagCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 60019 0.66 0.609484
Target:  5'- cCGGUgGGCAccugcuCGCCUUCggcggcucccGCACCUGGc -3'
miRNA:   3'- -GCCG-CCGUuu----GCGGAAG----------CGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 59201 0.66 0.609484
Target:  5'- aCGGCGGUAGA--CCUUCaGCGUCUGGGg -3'
miRNA:   3'- -GCCGCCGUUUgcGGAAG-CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 25898 0.66 0.609484
Target:  5'- uGGCGGUGAAUGgCUUCGuCGCCg--- -3'
miRNA:   3'- gCCGCCGUUUGCgGAAGC-GUGGgccu -5'
18400 3' -59.2 NC_004681.1 + 34827 0.66 0.609484
Target:  5'- gGGCGGCG---GCCgaaGCGCgCGGGa -3'
miRNA:   3'- gCCGCCGUuugCGGaagCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 61310 0.66 0.609484
Target:  5'- uCGGCGGCGucGCGCCagaUgGUGCagCGGAg -3'
miRNA:   3'- -GCCGCCGUu-UGCGGa--AgCGUGg-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 40480 0.66 0.600101
Target:  5'- -cGCGGCcGACGCCgccacgauguagcaaUCGUGCCCGa- -3'
miRNA:   3'- gcCGCCGuUUGCGGa--------------AGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 7372 0.66 0.600101
Target:  5'- aGGCGGCGcacucGGCGCCgagguggacggccgCGUcguggaugGCCUGGAg -3'
miRNA:   3'- gCCGCCGU-----UUGCGGaa------------GCG--------UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 46841 0.66 0.59906
Target:  5'- -cGCGGCAAcCGCCccgGCACCCcGAu -3'
miRNA:   3'- gcCGCCGUUuGCGGaagCGUGGGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.