Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18400 | 3' | -59.2 | NC_004681.1 | + | 19249 | 0.66 | 0.630376 |
Target: 5'- -cGCaGCAAGCGCCaggUCuuCACCUGGAc -3' miRNA: 3'- gcCGcCGUUUGCGGa--AGc-GUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 40480 | 0.66 | 0.600101 |
Target: 5'- -cGCGGCcGACGCCgccacgauguagcaaUCGUGCCCGa- -3' miRNA: 3'- gcCGCCGuUUGCGGa--------------AGCGUGGGCcu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 19558 | 0.66 | 0.630376 |
Target: 5'- -aGCGGCAuccAGCGCUUcccguucccCGCACCCGcGGu -3' miRNA: 3'- gcCGCCGU---UUGCGGAa--------GCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 21956 | 0.66 | 0.630376 |
Target: 5'- uGGCGGCcuGGCGuCCUUUGCgauGCUCGa- -3' miRNA: 3'- gCCGCCGu-UUGC-GGAAGCG---UGGGCcu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 60019 | 0.66 | 0.609484 |
Target: 5'- cCGGUgGGCAccugcuCGCCUUCggcggcucccGCACCUGGc -3' miRNA: 3'- -GCCG-CCGUuu----GCGGAAG----------CGUGGGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 9160 | 0.66 | 0.619925 |
Target: 5'- -cGCGGaGAACGUCUUCGaCGCCUucguGGAc -3' miRNA: 3'- gcCGCCgUUUGCGGAAGC-GUGGG----CCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 25213 | 0.66 | 0.627241 |
Target: 5'- aCGGCGGCGAccgcuucuucaacaACggcgGCCaUgGCGCCCGcGGc -3' miRNA: 3'- -GCCGCCGUU--------------UG----CGGaAgCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 31411 | 0.66 | 0.59906 |
Target: 5'- aGGCugcgaccaccaGGCGAAUGCCUUCGgGCUucugCGGc -3' miRNA: 3'- gCCG-----------CCGUUUGCGGAAGCgUGG----GCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 14550 | 0.66 | 0.59906 |
Target: 5'- gCGcGCGGCGuuCGCCUcCGCcUCgCGGGc -3' miRNA: 3'- -GC-CGCCGUuuGCGGAaGCGuGG-GCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 46841 | 0.66 | 0.59906 |
Target: 5'- -cGCGGCAAcCGCCccgGCACCCcGAu -3' miRNA: 3'- gcCGCCGUUuGCGGaagCGUGGGcCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 47524 | 0.66 | 0.59906 |
Target: 5'- gGGCGugacCGAugGCUgggugCGCuGCCCGGAu -3' miRNA: 3'- gCCGCc---GUUugCGGaa---GCG-UGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 34350 | 0.66 | 0.59906 |
Target: 5'- gCGGCGGCGugAGgGUUgugCGCGCUgCGGAa -3' miRNA: 3'- -GCCGCCGU--UUgCGGaa-GCGUGG-GCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 7372 | 0.66 | 0.600101 |
Target: 5'- aGGCGGCGcacucGGCGCCgagguggacggccgCGUcguggaugGCCUGGAg -3' miRNA: 3'- gCCGCCGU-----UUGCGGaa------------GCG--------UGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 49415 | 0.66 | 0.582438 |
Target: 5'- gCGGaCGGUGAGguugugcagaccgccCGCCUUgCGCGCCuCGGu -3' miRNA: 3'- -GCC-GCCGUUU---------------GCGGAA-GCGUGG-GCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 34827 | 0.66 | 0.609484 |
Target: 5'- gGGCGGCG---GCCgaaGCGCgCGGGa -3' miRNA: 3'- gCCGCCGUuugCGGaagCGUGgGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 40068 | 0.66 | 0.630376 |
Target: 5'- cCGGUGaGUugacccGGCGCCgaCGCGCgCGGAu -3' miRNA: 3'- -GCCGC-CGu-----UUGCGGaaGCGUGgGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 25898 | 0.66 | 0.609484 |
Target: 5'- uGGCGGUGAAUGgCUUCGuCGCCg--- -3' miRNA: 3'- gCCGCCGUUUGCgGAAGC-GUGGgccu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 50658 | 0.66 | 0.578296 |
Target: 5'- aGcGCuGCgAGACGCCUacCGCACCgGGGa -3' miRNA: 3'- gC-CGcCG-UUUGCGGAa-GCGUGGgCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 66759 | 0.66 | 0.585548 |
Target: 5'- cCGGUGGCAacgccgccuacaucGACGCUga-GCAcucCCUGGAc -3' miRNA: 3'- -GCCGCCGU--------------UUGCGGaagCGU---GGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 25073 | 0.66 | 0.59906 |
Target: 5'- gGGCGGCAccucgcucaGCCUccUCGgCACCuCGGu -3' miRNA: 3'- gCCGCCGUuug------CGGA--AGC-GUGG-GCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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