miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 31411 0.66 0.59906
Target:  5'- aGGCugcgaccaccaGGCGAAUGCCUUCGgGCUucugCGGc -3'
miRNA:   3'- gCCG-----------CCGUUUGCGGAAGCgUGG----GCCu -5'
18400 3' -59.2 NC_004681.1 + 53659 0.66 0.619925
Target:  5'- cCGGUGGC-GACGUUcUUGCACUCGa- -3'
miRNA:   3'- -GCCGCCGuUUGCGGaAGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 7433 0.66 0.619925
Target:  5'- gCGGCGGCGGG-GUCa--GC-CCCGGGu -3'
miRNA:   3'- -GCCGCCGUUUgCGGaagCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 14550 0.66 0.59906
Target:  5'- gCGcGCGGCGuuCGCCUcCGCcUCgCGGGc -3'
miRNA:   3'- -GC-CGCCGUuuGCGGAaGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 40068 0.66 0.630376
Target:  5'- cCGGUGaGUugacccGGCGCCgaCGCGCgCGGAu -3'
miRNA:   3'- -GCCGC-CGu-----UUGCGGaaGCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 59588 0.66 0.629331
Target:  5'- gGGUGGgGggUuCCUuggaggaUUGCACCCGGGc -3'
miRNA:   3'- gCCGCCgUuuGcGGA-------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 46881 0.66 0.630376
Target:  5'- aCGGCGcGCGggaugaccguGACGCCgugCGCGCgcagcgCCGGu -3'
miRNA:   3'- -GCCGC-CGU----------UUGCGGaa-GCGUG------GGCCu -5'
18400 3' -59.2 NC_004681.1 + 52540 0.66 0.630376
Target:  5'- gGGCGaGCAAGCguuccucaaucGCCUcgCGCACCUuGGc -3'
miRNA:   3'- gCCGC-CGUUUG-----------CGGAa-GCGUGGG-CCu -5'
18400 3' -59.2 NC_004681.1 + 17274 0.67 0.562825
Target:  5'- gGGCGGCGgguaucccggagacGACGCCcugcuggcgcgCGUGCCCGcGGg -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaa---------GCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 60291 0.67 0.56797
Target:  5'- cCGcGCGGCGggUGCCgaucaccUCGCGCUCa-- -3'
miRNA:   3'- -GC-CGCCGUuuGCGGa------AGCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 32234 0.67 0.517177
Target:  5'- -aGCGGCAGcGCgGCCUcgugUCuaGCCCGGAc -3'
miRNA:   3'- gcCGCCGUU-UG-CGGA----AGcgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 42267 0.67 0.517177
Target:  5'- -cGCGGaAGGCGCCUUCacgGCCUGGAa -3'
miRNA:   3'- gcCGCCgUUUGCGGAAGcg-UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 22279 0.67 0.521179
Target:  5'- uGGCGGCGugGGCGCCcugccCGUcauggcgcagggugaGCCCGGu -3'
miRNA:   3'- gCCGCCGU--UUGCGGaa---GCG---------------UGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 8484 0.67 0.527204
Target:  5'- aCGGCuGCGgcugagcugaugGGCGCCUUCGCGgaCGGu -3'
miRNA:   3'- -GCCGcCGU------------UUGCGGAAGCGUggGCCu -5'
18400 3' -59.2 NC_004681.1 + 27085 0.67 0.537303
Target:  5'- cCGGUcuuGGCAc-CGUCcacUCGCACCCGGu -3'
miRNA:   3'- -GCCG---CCGUuuGCGGa--AGCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 3027 0.67 0.537303
Target:  5'- -aGCGGC-AAUGCC--CGCACCCGcGGc -3'
miRNA:   3'- gcCGCCGuUUGCGGaaGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 8287 0.67 0.537303
Target:  5'- uCGGUGGCGcgGACGCCgccaaggaCG-GCCUGGAc -3'
miRNA:   3'- -GCCGCCGU--UUGCGGaa------GCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 39348 0.67 0.547468
Target:  5'- gCGGCGGCccuuGGCGCCcUUGC-CgCGGc -3'
miRNA:   3'- -GCCGCCGu---UUGCGGaAGCGuGgGCCu -5'
18400 3' -59.2 NC_004681.1 + 27676 0.67 0.558718
Target:  5'- aCGGCGGCGgcggugguggugguGGCGCCUacguuaaccgcaucuUCGUcCCCGu- -3'
miRNA:   3'- -GCCGCCGU--------------UUGCGGA---------------AGCGuGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 17963 0.67 0.557692
Target:  5'- uGGaGGUccuccagaguGAACGCCgggGCGCCCGGGu -3'
miRNA:   3'- gCCgCCG----------UUUGCGGaagCGUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.