Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18400 | 3' | -59.2 | NC_004681.1 | + | 58050 | 0.69 | 0.411183 |
Target: 5'- uCGGCGGCAugagcaacgagaacuGGCGCgUggaagCGCgcugcaacggccaagACCCGGAa -3' miRNA: 3'- -GCCGCCGU---------------UUGCGgAa----GCG---------------UGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 36962 | 0.69 | 0.421901 |
Target: 5'- gCGGCGGCcgucaccgGAACGCCcUUGCACgagUGGAu -3' miRNA: 3'- -GCCGCCG--------UUUGCGGaAGCGUGg--GCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 27814 | 0.69 | 0.449416 |
Target: 5'- gCGGCGGCGccAACGgUggCGCAUCCGu- -3' miRNA: 3'- -GCCGCCGU--UUGCgGaaGCGUGGGCcu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 15465 | 0.68 | 0.491481 |
Target: 5'- uGGCgucGGCGAACGCCUUacccucggcgguuaGCugCUGGu -3' miRNA: 3'- gCCG---CCGUUUGCGGAAg-------------CGugGGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 19435 | 0.68 | 0.486607 |
Target: 5'- -uGCGGCAccgauggcaccguAAUGCgUUgGUACCCGGGa -3' miRNA: 3'- gcCGCCGU-------------UUGCGgAAgCGUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 37206 | 0.68 | 0.477891 |
Target: 5'- aCGGCGcGCAcguaGAUGUC-UC-CACCCGGGg -3' miRNA: 3'- -GCCGC-CGU----UUGCGGaAGcGUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 14572 | 0.68 | 0.477891 |
Target: 5'- aCGGCcGCAGuCGCCUUCGgCAC-CGGc -3' miRNA: 3'- -GCCGcCGUUuGCGGAAGC-GUGgGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 59106 | 0.68 | 0.491481 |
Target: 5'- -cGCGGUggGCGCCcucccccacgaggucUUCgaGCACCUGGGc -3' miRNA: 3'- gcCGCCGuuUGCGG---------------AAG--CGUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 23462 | 0.68 | 0.46259 |
Target: 5'- aGGCgGGCAggAgguugaccaccucggGCGCCUgaaGCugCCGGAa -3' miRNA: 3'- gCCG-CCGU--U---------------UGCGGAag-CGugGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 32955 | 0.68 | 0.48758 |
Target: 5'- uCGGCGGCGggUGCUUcgGCaACCCGu- -3' miRNA: 3'- -GCCGCCGUuuGCGGAagCG-UGGGCcu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 33286 | 0.68 | 0.49736 |
Target: 5'- gGGUGuCAucGACGCCggUCGCGCCgCGGu -3' miRNA: 3'- gCCGCcGU--UUGCGGa-AGCGUGG-GCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 20012 | 0.68 | 0.468298 |
Target: 5'- aGGCccGCGGugGCCUUcaugcCGUGCCCGGu -3' miRNA: 3'- gCCGc-CGUUugCGGAA-----GCGUGGGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 20544 | 0.68 | 0.496378 |
Target: 5'- gGGCGGCGAccaccuuGCuGUCgauggUCGCGCCUGaGAu -3' miRNA: 3'- gCCGCCGUU-------UG-CGGa----AGCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 24053 | 0.68 | 0.49736 |
Target: 5'- aGGuCGGCGAACGUgUUgGCacGCCCGa- -3' miRNA: 3'- gCC-GCCGUUUGCGgAAgCG--UGGGCcu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 7249 | 0.68 | 0.511198 |
Target: 5'- gGGUGuCGAGCGCCUUggacugcaggaucacCGCAuCCCGGu -3' miRNA: 3'- gCCGCcGUUUGCGGAA---------------GCGU-GGGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 41880 | 0.68 | 0.468298 |
Target: 5'- gCGGC-GCGAAgGCCgUCGaACCUGGAg -3' miRNA: 3'- -GCCGcCGUUUgCGGaAGCgUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 30682 | 0.68 | 0.48758 |
Target: 5'- aGGCaGCGAAcCGCCUUgGCGCuugcgCCGGu -3' miRNA: 3'- gCCGcCGUUU-GCGGAAgCGUG-----GGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 17274 | 0.67 | 0.562825 |
Target: 5'- gGGCGGCGgguaucccggagacGACGCCcugcuggcgcgCGUGCCCGcGGg -3' miRNA: 3'- gCCGCCGU--------------UUGCGGaa---------GCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 3027 | 0.67 | 0.537303 |
Target: 5'- -aGCGGC-AAUGCC--CGCACCCGcGGc -3' miRNA: 3'- gcCGCCGuUUGCGGaaGCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 32234 | 0.67 | 0.517177 |
Target: 5'- -aGCGGCAGcGCgGCCUcgugUCuaGCCCGGAc -3' miRNA: 3'- gcCGCCGUU-UG-CGGA----AGcgUGGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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