miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 18402 1.08 0.000751
Target:  5'- gCGGCGGCAAACGCCUUCGCACCCGGAu -3'
miRNA:   3'- -GCCGCCGUUUGCGGAAGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 57171 0.79 0.102809
Target:  5'- gCGGaGGCAGACGCCUUCGU-CCaCGGAc -3'
miRNA:   3'- -GCCgCCGUUUGCGGAAGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 18188 0.76 0.157122
Target:  5'- uGGCGGUccugGAGCGCCUcccggCGCAccCCCGGGu -3'
miRNA:   3'- gCCGCCG----UUUGCGGAa----GCGU--GGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 5435 0.74 0.224653
Target:  5'- aGGCGuGCcAGCGCCUgugCGCGCuuGGc -3'
miRNA:   3'- gCCGC-CGuUUGCGGAa--GCGUGggCCu -5'
18400 3' -59.2 NC_004681.1 + 54994 0.73 0.246219
Target:  5'- uGGC-GCAAGCucgGCCUgaagugccuucaggUCGCGCCCGGGg -3'
miRNA:   3'- gCCGcCGUUUG---CGGA--------------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 9289 0.73 0.24804
Target:  5'- gGGCGGCAacuucuucggcAACGCCUaCGgcaACCCGGu -3'
miRNA:   3'- gCCGCCGU-----------UUGCGGAaGCg--UGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 26812 0.72 0.266875
Target:  5'- gCGGCGGCcAACGCugacgucuucggCUUCGuUACCUGGGa -3'
miRNA:   3'- -GCCGCCGuUUGCG------------GAAGC-GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 52964 0.72 0.280064
Target:  5'- gGGCacgcgGGCAGGCcgauggccaGCCUUC-CGCCCGGAa -3'
miRNA:   3'- gCCG-----CCGUUUG---------CGGAAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 62524 0.71 0.310162
Target:  5'- gGGCGGCGgagagggcggugucGGCGCCcagccaugccaGUACCCGGAu -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaag--------CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 60389 0.71 0.322723
Target:  5'- uGGCGGCGAAUGuCCUggaGCACgguaCGGGg -3'
miRNA:   3'- gCCGCCGUUUGC-GGAag-CGUGg---GCCU- -5'
18400 3' -59.2 NC_004681.1 + 67761 0.71 0.337981
Target:  5'- gCGGCGGUAcuucAAUGCCUagccUCGgccguagccucCACCCGGGc -3'
miRNA:   3'- -GCCGCCGU----UUGCGGA----AGC-----------GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 56432 0.7 0.353758
Target:  5'- aGGCGcGCugcaccuuGGACGCCUUgGCGCCgUGGGu -3'
miRNA:   3'- gCCGC-CG--------UUUGCGGAAgCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 66233 0.7 0.353758
Target:  5'- uCGcGCGGCAAGCGCaugaaGCACaccaCGGAa -3'
miRNA:   3'- -GC-CGCCGUUUGCGgaag-CGUGg---GCCU- -5'
18400 3' -59.2 NC_004681.1 + 14455 0.7 0.361838
Target:  5'- gCGGaGGCGAACGCCgcgCGCGCCg--- -3'
miRNA:   3'- -GCCgCCGUUUGCGGaa-GCGUGGgccu -5'
18400 3' -59.2 NC_004681.1 + 30577 0.7 0.394562
Target:  5'- cCGGC-GCAAGCGCCaaggcggUUCGCugCCuGAc -3'
miRNA:   3'- -GCCGcCGUUUGCGG-------AAGCGugGGcCU- -5'
18400 3' -59.2 NC_004681.1 + 19520 0.7 0.395426
Target:  5'- uCGGUGccGCAGACGCCUgcguccUCGuCGCCCGu- -3'
miRNA:   3'- -GCCGC--CGUUUGCGGA------AGC-GUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 58050 0.69 0.411183
Target:  5'- uCGGCGGCAugagcaacgagaacuGGCGCgUggaagCGCgcugcaacggccaagACCCGGAa -3'
miRNA:   3'- -GCCGCCGU---------------UUGCGgAa----GCG---------------UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 53570 0.69 0.412957
Target:  5'- gGuGCGGCGuucGAUGUCUUCGUugCCGaGGg -3'
miRNA:   3'- gC-CGCCGU---UUGCGGAAGCGugGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 16125 0.69 0.421901
Target:  5'- gCGGCGGCGcccuUGCCa--GCAgCCGGGa -3'
miRNA:   3'- -GCCGCCGUuu--GCGGaagCGUgGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 36962 0.69 0.421901
Target:  5'- gCGGCGGCcgucaccgGAACGCCcUUGCACgagUGGAu -3'
miRNA:   3'- -GCCGCCG--------UUUGCGGaAGCGUGg--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.