Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18400 | 3' | -59.2 | NC_004681.1 | + | 63838 | 0.67 | 0.526198 |
Target: 5'- uGGUGGCGuaccgagGGCGCCguaGCGCCCu-- -3' miRNA: 3'- gCCGCCGU-------UUGCGGaagCGUGGGccu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 8484 | 0.67 | 0.527204 |
Target: 5'- aCGGCuGCGgcugagcugaugGGCGCCUUCGCGgaCGGu -3' miRNA: 3'- -GCCGcCGU------------UUGCGGAAGCGUggGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 8287 | 0.67 | 0.537303 |
Target: 5'- uCGGUGGCGcgGACGCCgccaaggaCG-GCCUGGAc -3' miRNA: 3'- -GCCGCCGU--UUGCGGaa------GCgUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 3027 | 0.67 | 0.537303 |
Target: 5'- -aGCGGC-AAUGCC--CGCACCCGcGGc -3' miRNA: 3'- gcCGCCGuUUGCGGaaGCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 27085 | 0.67 | 0.537303 |
Target: 5'- cCGGUcuuGGCAc-CGUCcacUCGCACCCGGu -3' miRNA: 3'- -GCCG---CCGUuuGCGGa--AGCGUGGGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 20109 | 0.67 | 0.547468 |
Target: 5'- -cGCGGUucgacAGCGCCaa-GUGCCCGGAc -3' miRNA: 3'- gcCGCCGu----UUGCGGaagCGUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 39348 | 0.67 | 0.547468 |
Target: 5'- gCGGCGGCccuuGGCGCCcUUGC-CgCGGc -3' miRNA: 3'- -GCCGCCGu---UUGCGGaAGCGuGgGCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 17963 | 0.67 | 0.557692 |
Target: 5'- uGGaGGUccuccagaguGAACGCCgggGCGCCCGGGu -3' miRNA: 3'- gCCgCCG----------UUUGCGGaagCGUGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 27676 | 0.67 | 0.558718 |
Target: 5'- aCGGCGGCGgcggugguggugguGGCGCCUacguuaaccgcaucuUCGUcCCCGu- -3' miRNA: 3'- -GCCGCCGU--------------UUGCGGA---------------AGCGuGGGCcu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 17274 | 0.67 | 0.562825 |
Target: 5'- gGGCGGCGgguaucccggagacGACGCCcugcuggcgcgCGUGCCCGcGGg -3' miRNA: 3'- gCCGCCGU--------------UUGCGGaa---------GCGUGGGC-CU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 60291 | 0.67 | 0.56797 |
Target: 5'- cCGcGCGGCGggUGCCgaucaccUCGCGCUCa-- -3' miRNA: 3'- -GC-CGCCGUuuGCGGa------AGCGUGGGccu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 50658 | 0.66 | 0.578296 |
Target: 5'- aGcGCuGCgAGACGCCUacCGCACCgGGGa -3' miRNA: 3'- gC-CGcCG-UUUGCGGAa-GCGUGGgCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 49415 | 0.66 | 0.582438 |
Target: 5'- gCGGaCGGUGAGguugugcagaccgccCGCCUUgCGCGCCuCGGu -3' miRNA: 3'- -GCC-GCCGUUU---------------GCGGAA-GCGUGG-GCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 66759 | 0.66 | 0.585548 |
Target: 5'- cCGGUGGCAacgccgccuacaucGACGCUga-GCAcucCCUGGAc -3' miRNA: 3'- -GCCGCCGU--------------UUGCGGaagCGU---GGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 47524 | 0.66 | 0.59906 |
Target: 5'- gGGCGugacCGAugGCUgggugCGCuGCCCGGAu -3' miRNA: 3'- gCCGCc---GUUugCGGaa---GCG-UGGGCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 46841 | 0.66 | 0.59906 |
Target: 5'- -cGCGGCAAcCGCCccgGCACCCcGAu -3' miRNA: 3'- gcCGCCGUUuGCGGaagCGUGGGcCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 14550 | 0.66 | 0.59906 |
Target: 5'- gCGcGCGGCGuuCGCCUcCGCcUCgCGGGc -3' miRNA: 3'- -GC-CGCCGUuuGCGGAaGCGuGG-GCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 31411 | 0.66 | 0.59906 |
Target: 5'- aGGCugcgaccaccaGGCGAAUGCCUUCGgGCUucugCGGc -3' miRNA: 3'- gCCG-----------CCGUUUGCGGAAGCgUGG----GCCu -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 34350 | 0.66 | 0.59906 |
Target: 5'- gCGGCGGCGugAGgGUUgugCGCGCUgCGGAa -3' miRNA: 3'- -GCCGCCGU--UUgCGGaa-GCGUGG-GCCU- -5' |
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18400 | 3' | -59.2 | NC_004681.1 | + | 25073 | 0.66 | 0.59906 |
Target: 5'- gGGCGGCAccucgcucaGCCUccUCGgCACCuCGGu -3' miRNA: 3'- gCCGCCGUuug------CGGA--AGC-GUGG-GCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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