miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 47524 0.66 0.59906
Target:  5'- gGGCGugacCGAugGCUgggugCGCuGCCCGGAu -3'
miRNA:   3'- gCCGCc---GUUugCGGaa---GCG-UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 25073 0.66 0.59906
Target:  5'- gGGCGGCAccucgcucaGCCUccUCGgCACCuCGGu -3'
miRNA:   3'- gCCGCCGUuug------CGGA--AGC-GUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 34350 0.66 0.59906
Target:  5'- gCGGCGGCGugAGgGUUgugCGCGCUgCGGAa -3'
miRNA:   3'- -GCCGCCGU--UUgCGGaa-GCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 31411 0.66 0.59906
Target:  5'- aGGCugcgaccaccaGGCGAAUGCCUUCGgGCUucugCGGc -3'
miRNA:   3'- gCCG-----------CCGUUUGCGGAAGCgUGG----GCCu -5'
18400 3' -59.2 NC_004681.1 + 14550 0.66 0.59906
Target:  5'- gCGcGCGGCGuuCGCCUcCGCcUCgCGGGc -3'
miRNA:   3'- -GC-CGCCGUuuGCGGAaGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 66759 0.66 0.585548
Target:  5'- cCGGUGGCAacgccgccuacaucGACGCUga-GCAcucCCUGGAc -3'
miRNA:   3'- -GCCGCCGU--------------UUGCGGaagCGU---GGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 49415 0.66 0.582438
Target:  5'- gCGGaCGGUGAGguugugcagaccgccCGCCUUgCGCGCCuCGGu -3'
miRNA:   3'- -GCC-GCCGUUU---------------GCGGAA-GCGUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 50658 0.66 0.578296
Target:  5'- aGcGCuGCgAGACGCCUacCGCACCgGGGa -3'
miRNA:   3'- gC-CGcCG-UUUGCGGAa-GCGUGGgCCU- -5'
18400 3' -59.2 NC_004681.1 + 60291 0.67 0.56797
Target:  5'- cCGcGCGGCGggUGCCgaucaccUCGCGCUCa-- -3'
miRNA:   3'- -GC-CGCCGUuuGCGGa------AGCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 17274 0.67 0.562825
Target:  5'- gGGCGGCGgguaucccggagacGACGCCcugcuggcgcgCGUGCCCGcGGg -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaa---------GCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 27676 0.67 0.558718
Target:  5'- aCGGCGGCGgcggugguggugguGGCGCCUacguuaaccgcaucuUCGUcCCCGu- -3'
miRNA:   3'- -GCCGCCGU--------------UUGCGGA---------------AGCGuGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 17963 0.67 0.557692
Target:  5'- uGGaGGUccuccagaguGAACGCCgggGCGCCCGGGu -3'
miRNA:   3'- gCCgCCG----------UUUGCGGaagCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 20109 0.67 0.547468
Target:  5'- -cGCGGUucgacAGCGCCaa-GUGCCCGGAc -3'
miRNA:   3'- gcCGCCGu----UUGCGGaagCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 39348 0.67 0.547468
Target:  5'- gCGGCGGCccuuGGCGCCcUUGC-CgCGGc -3'
miRNA:   3'- -GCCGCCGu---UUGCGGaAGCGuGgGCCu -5'
18400 3' -59.2 NC_004681.1 + 27085 0.67 0.537303
Target:  5'- cCGGUcuuGGCAc-CGUCcacUCGCACCCGGu -3'
miRNA:   3'- -GCCG---CCGUuuGCGGa--AGCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 8287 0.67 0.537303
Target:  5'- uCGGUGGCGcgGACGCCgccaaggaCG-GCCUGGAc -3'
miRNA:   3'- -GCCGCCGU--UUGCGGaa------GCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 3027 0.67 0.537303
Target:  5'- -aGCGGC-AAUGCC--CGCACCCGcGGc -3'
miRNA:   3'- gcCGCCGuUUGCGGaaGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 8484 0.67 0.527204
Target:  5'- aCGGCuGCGgcugagcugaugGGCGCCUUCGCGgaCGGu -3'
miRNA:   3'- -GCCGcCGU------------UUGCGGAAGCGUggGCCu -5'
18400 3' -59.2 NC_004681.1 + 63838 0.67 0.526198
Target:  5'- uGGUGGCGuaccgagGGCGCCguaGCGCCCu-- -3'
miRNA:   3'- gCCGCCGU-------UUGCGGaagCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 22279 0.67 0.521179
Target:  5'- uGGCGGCGugGGCGCCcugccCGUcauggcgcagggugaGCCCGGu -3'
miRNA:   3'- gCCGCCGU--UUGCGGaa---GCG---------------UGGGCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.