miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 32234 0.67 0.517177
Target:  5'- -aGCGGCAGcGCgGCCUcgugUCuaGCCCGGAc -3'
miRNA:   3'- gcCGCCGUU-UG-CGGA----AGcgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 42267 0.67 0.517177
Target:  5'- -cGCGGaAGGCGCCUUCacgGCCUGGAa -3'
miRNA:   3'- gcCGCCgUUUGCGGAAGcg-UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 7249 0.68 0.511198
Target:  5'- gGGUGuCGAGCGCCUUggacugcaggaucacCGCAuCCCGGu -3'
miRNA:   3'- gCCGCcGUUUGCGGAA---------------GCGU-GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 33286 0.68 0.49736
Target:  5'- gGGUGuCAucGACGCCggUCGCGCCgCGGu -3'
miRNA:   3'- gCCGCcGU--UUGCGGa-AGCGUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 24053 0.68 0.49736
Target:  5'- aGGuCGGCGAACGUgUUgGCacGCCCGa- -3'
miRNA:   3'- gCC-GCCGUUUGCGgAAgCG--UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 20544 0.68 0.496378
Target:  5'- gGGCGGCGAccaccuuGCuGUCgauggUCGCGCCUGaGAu -3'
miRNA:   3'- gCCGCCGUU-------UG-CGGa----AGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 59106 0.68 0.491481
Target:  5'- -cGCGGUggGCGCCcucccccacgaggucUUCgaGCACCUGGGc -3'
miRNA:   3'- gcCGCCGuuUGCGG---------------AAG--CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 15465 0.68 0.491481
Target:  5'- uGGCgucGGCGAACGCCUUacccucggcgguuaGCugCUGGu -3'
miRNA:   3'- gCCG---CCGUUUGCGGAAg-------------CGugGGCCu -5'
18400 3' -59.2 NC_004681.1 + 30682 0.68 0.48758
Target:  5'- aGGCaGCGAAcCGCCUUgGCGCuugcgCCGGu -3'
miRNA:   3'- gCCGcCGUUU-GCGGAAgCGUG-----GGCCu -5'
18400 3' -59.2 NC_004681.1 + 32955 0.68 0.48758
Target:  5'- uCGGCGGCGggUGCUUcgGCaACCCGu- -3'
miRNA:   3'- -GCCGCCGUuuGCGGAagCG-UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 19435 0.68 0.486607
Target:  5'- -uGCGGCAccgauggcaccguAAUGCgUUgGUACCCGGGa -3'
miRNA:   3'- gcCGCCGU-------------UUGCGgAAgCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 14572 0.68 0.477891
Target:  5'- aCGGCcGCAGuCGCCUUCGgCAC-CGGc -3'
miRNA:   3'- -GCCGcCGUUuGCGGAAGC-GUGgGCCu -5'
18400 3' -59.2 NC_004681.1 + 37206 0.68 0.477891
Target:  5'- aCGGCGcGCAcguaGAUGUC-UC-CACCCGGGg -3'
miRNA:   3'- -GCCGC-CGU----UUGCGGaAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 41880 0.68 0.468298
Target:  5'- gCGGC-GCGAAgGCCgUCGaACCUGGAg -3'
miRNA:   3'- -GCCGcCGUUUgCGGaAGCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 20012 0.68 0.468298
Target:  5'- aGGCccGCGGugGCCUUcaugcCGUGCCCGGu -3'
miRNA:   3'- gCCGc-CGUUugCGGAA-----GCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 23462 0.68 0.46259
Target:  5'- aGGCgGGCAggAgguugaccaccucggGCGCCUgaaGCugCCGGAa -3'
miRNA:   3'- gCCG-CCGU--U---------------UGCGGAag-CGugGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 27814 0.69 0.449416
Target:  5'- gCGGCGGCGccAACGgUggCGCAUCCGu- -3'
miRNA:   3'- -GCCGCCGU--UUGCgGaaGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 57893 0.69 0.440133
Target:  5'- uCGGCGGCGcGGCGCgUggUCGCGgucUCCGGu -3'
miRNA:   3'- -GCCGCCGU-UUGCGgA--AGCGU---GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 54252 0.69 0.43005
Target:  5'- aCGGUGGCGAuuucucuugcGCGCgUUgacuuucCGCuCCCGGAg -3'
miRNA:   3'- -GCCGCCGUU----------UGCGgAA-------GCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 36962 0.69 0.421901
Target:  5'- gCGGCGGCcgucaccgGAACGCCcUUGCACgagUGGAu -3'
miRNA:   3'- -GCCGCCG--------UUUGCGGaAGCGUGg--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.