miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 3027 0.67 0.537303
Target:  5'- -aGCGGC-AAUGCC--CGCACCCGcGGc -3'
miRNA:   3'- gcCGCCGuUUGCGGaaGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 5435 0.74 0.224653
Target:  5'- aGGCGuGCcAGCGCCUgugCGCGCuuGGc -3'
miRNA:   3'- gCCGC-CGuUUGCGGAa--GCGUGggCCu -5'
18400 3' -59.2 NC_004681.1 + 7249 0.68 0.511198
Target:  5'- gGGUGuCGAGCGCCUUggacugcaggaucacCGCAuCCCGGu -3'
miRNA:   3'- gCCGCcGUUUGCGGAA---------------GCGU-GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 7372 0.66 0.600101
Target:  5'- aGGCGGCGcacucGGCGCCgagguggacggccgCGUcguggaugGCCUGGAg -3'
miRNA:   3'- gCCGCCGU-----UUGCGGaa------------GCG--------UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 7433 0.66 0.619925
Target:  5'- gCGGCGGCGGG-GUCa--GC-CCCGGGu -3'
miRNA:   3'- -GCCGCCGUUUgCGGaagCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 8287 0.67 0.537303
Target:  5'- uCGGUGGCGcgGACGCCgccaaggaCG-GCCUGGAc -3'
miRNA:   3'- -GCCGCCGU--UUGCGGaa------GCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 8484 0.67 0.527204
Target:  5'- aCGGCuGCGgcugagcugaugGGCGCCUUCGCGgaCGGu -3'
miRNA:   3'- -GCCGcCGU------------UUGCGGAAGCGUggGCCu -5'
18400 3' -59.2 NC_004681.1 + 9160 0.66 0.619925
Target:  5'- -cGCGGaGAACGUCUUCGaCGCCUucguGGAc -3'
miRNA:   3'- gcCGCCgUUUGCGGAAGC-GUGGG----CCU- -5'
18400 3' -59.2 NC_004681.1 + 9289 0.73 0.24804
Target:  5'- gGGCGGCAacuucuucggcAACGCCUaCGgcaACCCGGu -3'
miRNA:   3'- gCCGCCGU-----------UUGCGGAaGCg--UGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 14455 0.7 0.361838
Target:  5'- gCGGaGGCGAACGCCgcgCGCGCCg--- -3'
miRNA:   3'- -GCCgCCGUUUGCGGaa-GCGUGGgccu -5'
18400 3' -59.2 NC_004681.1 + 14550 0.66 0.59906
Target:  5'- gCGcGCGGCGuuCGCCUcCGCcUCgCGGGc -3'
miRNA:   3'- -GC-CGCCGUuuGCGGAaGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 14572 0.68 0.477891
Target:  5'- aCGGCcGCAGuCGCCUUCGgCAC-CGGc -3'
miRNA:   3'- -GCCGcCGUUuGCGGAAGC-GUGgGCCu -5'
18400 3' -59.2 NC_004681.1 + 15465 0.68 0.491481
Target:  5'- uGGCgucGGCGAACGCCUUacccucggcgguuaGCugCUGGu -3'
miRNA:   3'- gCCG---CCGUUUGCGGAAg-------------CGugGGCCu -5'
18400 3' -59.2 NC_004681.1 + 16125 0.69 0.421901
Target:  5'- gCGGCGGCGcccuUGCCa--GCAgCCGGGa -3'
miRNA:   3'- -GCCGCCGUuu--GCGGaagCGUgGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 17274 0.67 0.562825
Target:  5'- gGGCGGCGgguaucccggagacGACGCCcugcuggcgcgCGUGCCCGcGGg -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaa---------GCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 17963 0.67 0.557692
Target:  5'- uGGaGGUccuccagaguGAACGCCgggGCGCCCGGGu -3'
miRNA:   3'- gCCgCCG----------UUUGCGGaagCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 18188 0.76 0.157122
Target:  5'- uGGCGGUccugGAGCGCCUcccggCGCAccCCCGGGu -3'
miRNA:   3'- gCCGCCG----UUUGCGGAa----GCGU--GGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 18402 1.08 0.000751
Target:  5'- gCGGCGGCAAACGCCUUCGCACCCGGAu -3'
miRNA:   3'- -GCCGCCGUUUGCGGAAGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 19249 0.66 0.630376
Target:  5'- -cGCaGCAAGCGCCaggUCuuCACCUGGAc -3'
miRNA:   3'- gcCGcCGUUUGCGGa--AGc-GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 19435 0.68 0.486607
Target:  5'- -uGCGGCAccgauggcaccguAAUGCgUUgGUACCCGGGa -3'
miRNA:   3'- gcCGCCGU-------------UUGCGgAAgCGUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.