miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 19520 0.7 0.395426
Target:  5'- uCGGUGccGCAGACGCCUgcguccUCGuCGCCCGu- -3'
miRNA:   3'- -GCCGC--CGUUUGCGGA------AGC-GUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 19558 0.66 0.630376
Target:  5'- -aGCGGCAuccAGCGCUUcccguucccCGCACCCGcGGu -3'
miRNA:   3'- gcCGCCGU---UUGCGGAa--------GCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 20012 0.68 0.468298
Target:  5'- aGGCccGCGGugGCCUUcaugcCGUGCCCGGu -3'
miRNA:   3'- gCCGc-CGUUugCGGAA-----GCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 20109 0.67 0.547468
Target:  5'- -cGCGGUucgacAGCGCCaa-GUGCCCGGAc -3'
miRNA:   3'- gcCGCCGu----UUGCGGaagCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 20544 0.68 0.496378
Target:  5'- gGGCGGCGAccaccuuGCuGUCgauggUCGCGCCUGaGAu -3'
miRNA:   3'- gCCGCCGUU-------UG-CGGa----AGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 21956 0.66 0.630376
Target:  5'- uGGCGGCcuGGCGuCCUUUGCgauGCUCGa- -3'
miRNA:   3'- gCCGCCGu-UUGC-GGAAGCG---UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 22279 0.67 0.521179
Target:  5'- uGGCGGCGugGGCGCCcugccCGUcauggcgcagggugaGCCCGGu -3'
miRNA:   3'- gCCGCCGU--UUGCGGaa---GCG---------------UGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 23462 0.68 0.46259
Target:  5'- aGGCgGGCAggAgguugaccaccucggGCGCCUgaaGCugCCGGAa -3'
miRNA:   3'- gCCG-CCGU--U---------------UGCGGAag-CGugGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 24053 0.68 0.49736
Target:  5'- aGGuCGGCGAACGUgUUgGCacGCCCGa- -3'
miRNA:   3'- gCC-GCCGUUUGCGgAAgCG--UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 25073 0.66 0.59906
Target:  5'- gGGCGGCAccucgcucaGCCUccUCGgCACCuCGGu -3'
miRNA:   3'- gCCGCCGUuug------CGGA--AGC-GUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 25213 0.66 0.627241
Target:  5'- aCGGCGGCGAccgcuucuucaacaACggcgGCCaUgGCGCCCGcGGc -3'
miRNA:   3'- -GCCGCCGUU--------------UG----CGGaAgCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 25898 0.66 0.609484
Target:  5'- uGGCGGUGAAUGgCUUCGuCGCCg--- -3'
miRNA:   3'- gCCGCCGUUUGCgGAAGC-GUGGgccu -5'
18400 3' -59.2 NC_004681.1 + 26812 0.72 0.266875
Target:  5'- gCGGCGGCcAACGCugacgucuucggCUUCGuUACCUGGGa -3'
miRNA:   3'- -GCCGCCGuUUGCG------------GAAGC-GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 27085 0.67 0.537303
Target:  5'- cCGGUcuuGGCAc-CGUCcacUCGCACCCGGu -3'
miRNA:   3'- -GCCG---CCGUuuGCGGa--AGCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 27676 0.67 0.558718
Target:  5'- aCGGCGGCGgcggugguggugguGGCGCCUacguuaaccgcaucuUCGUcCCCGu- -3'
miRNA:   3'- -GCCGCCGU--------------UUGCGGA---------------AGCGuGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 27814 0.69 0.449416
Target:  5'- gCGGCGGCGccAACGgUggCGCAUCCGu- -3'
miRNA:   3'- -GCCGCCGU--UUGCgGaaGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 30577 0.7 0.394562
Target:  5'- cCGGC-GCAAGCGCCaaggcggUUCGCugCCuGAc -3'
miRNA:   3'- -GCCGcCGUUUGCGG-------AAGCGugGGcCU- -5'
18400 3' -59.2 NC_004681.1 + 30682 0.68 0.48758
Target:  5'- aGGCaGCGAAcCGCCUUgGCGCuugcgCCGGu -3'
miRNA:   3'- gCCGcCGUUU-GCGGAAgCGUG-----GGCCu -5'
18400 3' -59.2 NC_004681.1 + 31411 0.66 0.59906
Target:  5'- aGGCugcgaccaccaGGCGAAUGCCUUCGgGCUucugCGGc -3'
miRNA:   3'- gCCG-----------CCGUUUGCGGAAGCgUGG----GCCu -5'
18400 3' -59.2 NC_004681.1 + 32234 0.67 0.517177
Target:  5'- -aGCGGCAGcGCgGCCUcgugUCuaGCCCGGAc -3'
miRNA:   3'- gcCGCCGUU-UG-CGGA----AGcgUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.